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@NIB-SI

National Institute of Biology

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  1. pISA-tree pISA-tree Public

    pISA-tree: Standard project directory tree ( ISA framework compliant )

    Batchfile 7 3

  2. DiNAR DiNAR Public

    Differential Network Analysis in R

    HTML 1 1

  3. circadian-lesion circadian-lesion Public

    C++

  4. BoolDog BoolDog Public

    A Python package for analyses of Boolean and semi-quantitative Boolean networks.

    Jupyter Notebook

  5. skm-tools skm-tools Public

    Scripts and utilities for leveraging SKM resources

    Jupyter Notebook 3

Repositories

Showing 10 of 52 repositories
  • skm-tools Public

    Scripts and utilities for leveraging SKM resources

    NIB-SI/skm-tools’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 0 1 Updated Apr 21, 2026
  • promoteR Public

    Large scale promotor sequence extraction​ ​in R

    NIB-SI/promoteR’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Apr 13, 2026
  • BoolDog Public

    A Python package for analyses of Boolean and semi-quantitative Boolean networks.

    NIB-SI/BoolDog’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 4 0 Updated Mar 5, 2026
  • Adapt_field_ML Public

    Potato yield can be predicted by using drone-captured and environmental measurements early in the growing season

    NIB-SI/Adapt_field_ML’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 4, 2026
  • FaDSeqSes Public

    Factorial design of RNA-seq analyses

    NIB-SI/FaDSeqSes’s past year of commit activity
    0 0 0 0 Updated Mar 2, 2026
  • polyase Public

    A package for analyzing allele-specific expression in polyploid organisms

    NIB-SI/polyase’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 27, 2026
  • syntelogfinder Public

    Nextflow pipeline to find syntelogous genes in phased genome assemblies of polyploid plants

    NIB-SI/syntelogfinder’s past year of commit activity
    Nextflow 3 0 0 0 Updated Feb 18, 2026
  • longrnaseq Public

    Long-read RNA-seq nextflow pipeline for quantification, novel isoform discovery and quality control

    NIB-SI/longrnaseq’s past year of commit activity
    HTML 3 MIT 1 1 0 Updated Feb 13, 2026
  • HCS-proc Public

    Data processing pipeline for High-Content Screening using CellProfiler data.

    NIB-SI/HCS-proc’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 13, 2026
  • pss_viz Public Forked from vpodpecan/pss_viz

    Interactive search and visualization of the PSS model.

    NIB-SI/pss_viz’s past year of commit activity
    JavaScript 0 MIT 1 1 1 Updated Jan 10, 2026
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