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Clean up module files and versions #61

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@JessicaMeixner-NOAA

In PR #58, we added default module versions in the module file (copying things from ufs-weather-model), however, we did not reduce this to only the module files that were needed and did not check the module file versions. Additionally, the module file versions should be kept in the version files, not the module files so this needs to be cleaned up for all module files.

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