Gallery of Jupyter notebooks representing use cases
Notebooks in this repository
Notebook name
Description
Open in this repository
Link to Binder
subject_data.ipynb
It calculates descriptive statistics for a group of subjects from tabular data
open
image_data_mha.ipynb
It extracts image spacing, size, and pixel type from a group of .mha images
open
isq_io_viz.ipynb
Reading, writing, and visualizing .isq images
open Coming soon
How to explore the notebooks in this repository
The very easy way:
Go to binder:
Open a notebook
Run all cells (Cell -> Run all cells) or run one cell at the time sequentially (click on a cell -> Cell -> Run cell)
Do not forget to read the narrative of the notebook!
The easy way:
If you are not familiar with the Jupyter/python enviroment, watch this tutorial
Clone or download this repository (green button code above)
Open a notebook, run it, and then try it with your own data!
Notebooks in other repositories
Repository
Description
Open in this repository
Where to start exploring
ITKIOScanco
An ITK module to read and write Scanco microCT .isq files.
go to repository Click on the launch binder badge
pyKNEEr
An open and reproducible workflow for knee cartilage segmentation
go to repository Click on the launch binder badges
