PawSeq AI

Prototype Status • Canine genetic mutation analysis tool that parses VCF files, processes data, runs AI analysis and generates structured reports.

This project is currently in a prototype phase — features are under active development and not intended for production use.

Quick Start

1. Requirements

• Windows 10/11 (64-bit)

• Internet connection (for dependency installation)

2. First-time Setup

Double-click to run:

setup.bat

Automatically creates a virtual environment and installs all required dependencies.

3. Configuration

• Edit config.yaml: set data.input_path (VCF file path) and fill in canine details

• Place your VCF file inside the data/ directory

• (Optional) Add your OpenAI API key to .env to enable AI-powered analysis

4. Run Analysis

Double-click to run:

run.bat

5. View Results

Generated reports are saved to the output/ directory.

License

MIT