[cschanhniem]

Summary

• Propagate simulation proxy uncertainty into ranked outputs, Markdown reports, and selected-candidate evidence certificates in --simulation-mode info.
• Document the certificate uncertainty contract in schema and virtual-assay docs.
• Mark Phase 3 Loop 40 complete and shift lab-readiness onboarding to the next loop.

Verification

• python3 -m pytest -q tests/test_simulation_mode_cli.py tests/test_certificate_schema.py tests/test_docs_consistent.py
• ruff check src/openamp_foundry/pipeline.py tests/test_simulation_mode_cli.py tests/test_docs_consistent.py
• git diff --check
• python3 -m pytest -q → 1961 passed, 7 skipped
• pre-push pytest -q → 1961 passed, 7 skipped