cschanhniem · Jul 8, 2026 · Jul 8, 2026
diff --git a/docs/evidence/AUDIT_CHECKLIST_BENCHMARK_DOCS.md b/docs/evidence/AUDIT_CHECKLIST_BENCHMARK_DOCS.md
@@ -0,0 +1,8 @@
+# Audit Checklist: Benchmark Documentation
+
+- [ ] BENCHMARKING.md lists all benchmarks with targets
+- [ ] METRICS_CURRENT.md is the single source of truth
+- [ ] Each benchmark has a documented caveat
+- [ ] Makefile targets exist for all benchmarks
+- [ ] Benchmark gate passes
+- [ ] Simulation benchmarks are up to date
diff --git a/docs/evidence/AUDIT_CHECKLIST_CLAIM_WORDING.md b/docs/evidence/AUDIT_CHECKLIST_CLAIM_WORDING.md
@@ -0,0 +1,8 @@
+# Audit Checklist: Claim Wording
+
+- [ ] `python scripts/safety/check_claims.py` reports 0 findings
+- [ ] No document claims biological validation without wet-lab data
+- [ ] Terms like "proven", "drug candidate", "safe in humans" are absent
+- [ ] All computational results are described as predictions
+- [ ] Limitations are stated alongside every major claim
+- [ ] Benchmark claims reference charge-inflation caveat where relevant
diff --git a/docs/evidence/AUDIT_CHECKLIST_DEAD_ENDS.md b/docs/evidence/AUDIT_CHECKLIST_DEAD_ENDS.md
@@ -0,0 +1,7 @@
+# Audit Checklist: Dead-End Pages
+
+- [ ] Every page has a link back to PROJECT_INDEX.md or README.md
+- [ ] No page has only "under construction" content
+- [ ] Every page has at least one related document link
+- [ ] External links are checked and resolve correctly
+- [ ] No document has a "this page intentionally blank" pattern
diff --git a/docs/evidence/AUDIT_CHECKLIST_EXAMPLE_DOCS.md b/docs/evidence/AUDIT_CHECKLIST_EXAMPLE_DOCS.md
@@ -0,0 +1,7 @@
+# Audit Checklist: Example Documentation
+
+- [ ] All CLI examples work with current pipeline
+- [ ] Example output matches actual pipeline output
+- [ ] Example files in examples/ are referenced from docs
+- [ ] Demo candidates produce expected results
+- [ ] Synthetic data is clearly labeled as synthetic
diff --git a/docs/evidence/AUDIT_CHECKLIST_GLOSSARY_DOCS.md b/docs/evidence/AUDIT_CHECKLIST_GLOSSARY_DOCS.md
@@ -0,0 +1,7 @@
+# Audit Checklist: Glossary Documentation
+
+- [ ] All project-specific terms are defined in a glossary
+- [ ] Glossary entries are consistent across documents
+- [ ] Acronyms are expanded on first use
+- [ ] Terms are referenced from the relevant concept cards
+- [ ] Glossary is linked from PROJECT_INDEX.md
diff --git a/docs/evidence/AUDIT_CHECKLIST_ONBOARDING.md b/docs/evidence/AUDIT_CHECKLIST_ONBOARDING.md
@@ -0,0 +1,8 @@
+# Audit Checklist: Onboarding
+
+- [ ] QUICKSTART.md works from a clean checkout
+- [ ] CONTRIBUTING.md is up to date
+- [ ] CONTRIBUTOR_CURRICULUM.md stages are accurate
+- [ ] Runbooks cover the full contributor workflow
+- [ ] `make demo` succeeds
+- [ ] `python3 -m pytest -q` passes
diff --git a/docs/evidence/AUDIT_CHECKLIST_RELEASE_DOCS.md b/docs/evidence/AUDIT_CHECKLIST_RELEASE_DOCS.md
@@ -0,0 +1,8 @@
+# Audit Checklist: Release Documentation
+
+- [ ] `make full-reproducibility-report` succeeds
+- [ ] `check_doc_links.py` reports 0 broken links
+- [ ] `check_claims.py` reports 0 overclaiming phrases
+- [ ] METRICS_CURRENT.md matches current benchmark outputs
+- [ ] ROADMAP.md reflects completed work
+- [ ] PUBLICATION_PACK.md checklist is complete
diff --git a/docs/evidence/AUDIT_CHECKLIST_REVIEW_DOCS.md b/docs/evidence/AUDIT_CHECKLIST_REVIEW_DOCS.md
@@ -0,0 +1,7 @@
+# Audit Checklist: Review Documentation
+
+- [ ] EXPERT_REVIEW_PACK.md exists and is up to date
+- [ ] RELEASE_DRY_RUN_GUIDE.md matches current report output
+- [ ] PUBLICATION_PACK.md checklist is complete
+- [ ] Expert review template generates a valid issue
+- [ ] Decision log schema is referenced where decisions are logged
diff --git a/docs/evidence/AUDIT_CHECKLIST_SAFETY_DOCS.md b/docs/evidence/AUDIT_CHECKLIST_SAFETY_DOCS.md
@@ -0,0 +1,8 @@
+# Audit Checklist: Safety Documentation
+
+- [ ] SAFETY.md is accurate and current
+- [ ] RESPONSIBLE_USE.md covers allowed/forbidden uses
+- [ ] LIMITATIONS_OVERVIEW.md includes all known limitations
+- [ ] `check_claims.py` reports 0 overclaiming phrases
+- [ ] All safety policies are linked from relevant docs
+- [ ] Safety review template exists and is accessible
diff --git a/docs/evidence/AUDIT_CHECKLIST_STALE_DOCS.md b/docs/evidence/AUDIT_CHECKLIST_STALE_DOCS.md
@@ -0,0 +1,7 @@
+# Audit Checklist: Stale Documentation
+
+- [ ] Last update date is within 6 months for each doc
+- [ ] No document references removed features or commands
+- [ ] All code examples compile or run
+- [ ] Deprecated documents are marked and archived
+- [ ] Project INDEX.md has no dead entries
diff --git a/tests/test_audit_checklists.py b/tests/test_audit_checklists.py
@@ -0,0 +1,26 @@
+"""Tests for 10 audit checklists."""
+from pathlib import Path
+
+FILES = [
+    "AUDIT_CHECKLIST_ONBOARDING.md",
+    "AUDIT_CHECKLIST_SAFETY_DOCS.md",
+    "AUDIT_CHECKLIST_BENCHMARK_DOCS.md",
+    "AUDIT_CHECKLIST_REVIEW_DOCS.md",
+    "AUDIT_CHECKLIST_RELEASE_DOCS.md",
+    "AUDIT_CHECKLIST_EXAMPLE_DOCS.md",
+    "AUDIT_CHECKLIST_GLOSSARY_DOCS.md",
+    "AUDIT_CHECKLIST_STALE_DOCS.md",
+    "AUDIT_CHECKLIST_DEAD_ENDS.md",
+    "AUDIT_CHECKLIST_CLAIM_WORDING.md",
+]
+
+
+def test_all_exist():
+    for f in FILES:
+        assert Path("docs/evidence", f).exists(), f"Missing: {f}"
+
+
+def test_each_has_checklist():
+    for f in FILES:
+        text = Path("docs/evidence", f).read_text()
+        assert "- [" in text, f"{f} missing checklist items"