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feat: Phase Q Q2 pre-registration entry schema -- pre-commitment lock before wet-lab (closes PRE- reference from Q1 PEP) - #852

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feat/q2-pre-registration-entry
Jul 10, 2026
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feat: Phase Q Q2 pre-registration entry schema -- pre-commitment lock before wet-lab (closes PRE- reference from Q1 PEP)#852
cschanhniem merged 1 commit into
mainfrom
feat/q2-pre-registration-entry

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@cschanhniem cschanhniem commented Jul 10, 2026

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Summary

  • PreRegistrationEntry: 14 fields, locks hypothesis+endpoint+candidates before experiments
  • 9 validation rules: PRE- prefix, non-empty required strings, candidate_ids>=1, registered_date ISO format, registration_status in {submitted,approved,rejected}, notes length
  • 4 warnings: approved+dry_lab_only, no positive control, no negative control, single candidate
  • 63 tests; BASELINE 5036->5099
  • CLI: openamp-foundry pre-registration-check
  • Closes the open PRE- reference from Q1 PilotEvidencePackage

OpenCode
feat: Phase Q Q2 pre-registration entry schema -- locks hypothesis an…
3e0a4b1 
…d candidate list before wet-lab begins, prevents HARKing, referenced by PEP
@cschanhniem
cschanhniem merged commit 4da9fde into main Jul 10, 2026
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cschanhniem added a commit that referenced this pull request Jul 10, 2026
@cschanhniem OpenCode
feat: Phase X X4 recalibration confidence certificate schema (RCC-) -…
fa18d22 
…- machine-checkable A/B/C/D grade for calibration weight reliability based on cohort size and cross-batch consistency (#852) (#1011)

VALID_RCC_GRADES (A-D), VALID_RCC_VERDICTS (4: high_confidence/moderate_confidence/low_confidence/insufficient_data),
VALID_CONSISTENCY_RATINGS (4: consistent/moderately_consistent/inconsistent/unknown).
BatchCohortEntry helper; grade A (>=4 batches consistent), B (>=2 batches consistent/moderately_consistent),
D (insufficient_data when <2 batches or inconsistent).
cit_id and lpr_id prefix-validated; dry_lab_only=True enforced; 76 tests.
BASELINE updated 10367->10443.

Co-authored-by: OpenCode <opencode@example.com>
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