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docs: Phase I I3 citation template -- APA, BibTeX, CFF, in-text, data-availability formats for consumers of evidence certificates and pipeline outputs - #921

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feat/i3-citation-template
Jul 10, 2026
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cschanhniem merged 1 commit into
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feat/i3-citation-template

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Implements I3 from NEXT_100_PR_MAP: citation template for data consumers.

What

  • docs/CITATION_TEMPLATE.md: 6 citation formats
  • APA-style: repository citation + per-artifact citation
  • BibTeX: @software and @misc entries with COMMIT_SHA and ARTIFACT_ID placeholders
  • CFF: per-artifact CITATION.cff override template
  • Short in-text reference format
  • Data availability statement template for journal submissions
  • Placeholder table: VERSION, COMMIT_SHA, ARTIFACT_ID, DATE
  • Anti-misuse section: what NOT to cite as biological evidence
  • Docs-only PR; no code changes

Why

Without a citation template, partner labs cite the repo in inconsistent ways. Some cite only the URL (not reproducible), others cite an artifact ID without the commit SHA (ambiguous across releases), others omit the dry-lab disclaimer. This template standardizes citation while embedding the anti-overclaim disclaimer into the citation itself.

Disconfirming pass

  • Does not imply biological activity anywhere
  • Proof ladder and dry_lab_only flags visible in the CFF template
  • Data availability statement explicitly says 'no biological activity implied'

…-availability formats for consumers of evidence certificates and pipeline outputs (#919)
@cschanhniem
cschanhniem merged commit 6a59525 into main Jul 10, 2026
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cschanhniem added a commit that referenced this pull request Jul 10, 2026
…required files, checksum format, anti-rot guarantees, agent rules (#921) (#922)

Co-authored-by: OpenCode <opencode@example.com>
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