Joglekar et al. 2018

Inter-areal Balanced Amplification Enhances Signal Propagation in a Large-Scale Circuit Model of the Primate Cortex Madhura R. Joglekar, Jorge F. Mejias, Guangyu Robert Yang, Xiao-Jing Wang

https://www.cell.com/neuron/fulltext/S0896-6273(18)30152-1

Versions

• Original Matlab code
  • Rate models and data visualization
• Original Brian code
  • Spiking neuronal networks
• Python codes
  • Conversion from original matlab codes.
• Brian codes
  • Optimized version of original brian codes
• PyNN codes
  • Spiking neuronal networks
• NeuroML codes
  • Rate models

Simple examples

• Jupyter notebook

Figure 1

• Original matlab code
• Python code

Figure 2

• Original matlab code
• Python code

Figure 3

• Original matlab code
• Python code

Figure 4

• Python code

Figure 5

• Original Brian code - generate data
• Original Brian code - visualizataion
• Figure5B-Brian code
• Figure5B-PyNN code
• Figure5C-Brian code
• Figure5C-PyNN code
• Figure5E-Brian code
• Figure5E-PyNN code
• Figure5F-Original Matlab Code
• Figure5F-Python Code
• Figure5G-Original Matlab Code
• Figure5G-Python Code

Figure 6

• Original Brian code - generate data
• Original Brian code - visualizataion
• Figure6A-Brian code
• Figure6A-PyNN code
• Figure6B-Brian code
• Figure6B-PyNN code
• Figure6D-Brian code
• Figure6D-PyNN code

Figure 7

• Original Brian code - generate data
• Original Brian code - analyze data
• Original Brian code - visualizataion