Skip to content
@PDBeurope

PDBe EMBL-EBI

Popular repositories Loading

  1. arpeggio arpeggio Public

    Calculation of interatomic interactions in molecular structures

    Python 124 23

  2. ccdutils ccdutils Public

    A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

    Python 76 12

  3. pdbe-api-training pdbe-api-training Public

    Interactive Python notebooks for PDBe API training

    Jupyter Notebook 58 21

  4. pdb-images pdb-images Public

    Generates images from mmCIF/BCIF files

    TypeScript 45 5

  5. pdbecif pdbecif Public

    A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

    Python 38 4

  6. protein-cluster-conformers protein-cluster-conformers Public

    Clusters protein chains based on CA distance difference

    Python 16 1

Repositories

Showing 10 of 47 repositories
  • mmcif-validator Public

    Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.

    PDBeurope/mmcif-validator’s past year of commit activity
    Python 10 3 1 0 Updated Mar 25, 2026
  • pdb-images Public

    Generates images from mmCIF/BCIF files

    PDBeurope/pdb-images’s past year of commit activity
    TypeScript 45 Apache-2.0 5 0 0 Updated Mar 24, 2026
  • mmcif-gen Public

    This application is designed to create mmcif files from facilities data.

    PDBeurope/mmcif-gen’s past year of commit activity
    Python 5 0 2 0 Updated Mar 23, 2026
  • PDBeurope/PDBe-Pipelines’s past year of commit activity
    1 CC0-1.0 0 0 0 Updated Mar 18, 2026
  • protein-cluster-conformers Public

    Clusters protein chains based on CA distance difference

    PDBeurope/protein-cluster-conformers’s past year of commit activity
    Python 16 1 0 2 Updated Mar 18, 2026
  • PDBe-MCP-Servers Public

    PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through API tools and graph database schema assistance for intelligent Cypher query generation, bridging structural biology and AI research.

    PDBeurope/PDBe-MCP-Servers’s past year of commit activity
    Python 5 Apache-2.0 1 0 0 Updated Mar 16, 2026
  • ccdutils Public

    A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

    PDBeurope/ccdutils’s past year of commit activity
    Python 76 Apache-2.0 12 2 1 Updated Feb 28, 2026
  • pdbe-api-training Public

    Interactive Python notebooks for PDBe API training

    PDBeurope/pdbe-api-training’s past year of commit activity
    Jupyter Notebook 58 21 0 5 Updated Feb 11, 2026
  • mmcif-metadata-import Public

    Import metadata from mmCIF files into metadata-only files, or merge them into existing models

    PDBeurope/mmcif-metadata-import’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jan 28, 2026
  • InvestigationCIF Public

    Documentation for the mmcif Investigation dictionary

    PDBeurope/InvestigationCIF’s past year of commit activity
    4 CC0-1.0 1 2 0 Updated Jan 20, 2026

Most used topics

Loading…