Skip to content

Add term 'restored pathogenicity' #438

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
jseager7 merged 1 commit into from
Jul 15, 2025
Merged

Add term 'restored pathogenicity' #438

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
18 changes: 15 additions & 3 deletions src/ontology/phipo-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1357,6 +1357,7 @@ Declaration(Class(obo:PHIPO_0001444))
Declaration(Class(obo:PHIPO_0001445))
Declaration(Class(obo:PHIPO_0001446))
Declaration(Class(obo:PHIPO_0001447))
Declaration(Class(obo:PHIPO_0001448))
Declaration(ObjectProperty(obo:PHIPO_0000304))
Declaration(AnnotationProperty(obo:IAO_0000115))
Declaration(AnnotationProperty(obo:def))
Expand Down Expand Up @@ -14385,21 +14386,32 @@ SubClassOf(obo:PHIPO_0001445 obo:PHIPO_0001031)
# Class: obo:PHIPO_0001446 (reduced hyphal branching)

AnnotationAssertion(obo:IAO_0000115 obo:PHIPO_0001446 "A single species cell morphology phenotype in which fungal hyphae form a decreased number of branches.")
AnnotationAssertion(oboInOwl:hasOBONamespace obo:PHIPO_0001446 "single_species_phenotype")
AnnotationAssertion(oboInOwl:created_by obo:PHIPO_0001446 "changh")
AnnotationAssertion(oboInOwl:creation_date obo:PHIPO_0001446 "2025-04-28T13:12:25Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:PHIPO_0001446 "single_species_phenotype")
AnnotationAssertion(rdfs:label obo:PHIPO_0001446 "reduced hyphal branching"@en)
SubClassOf(obo:PHIPO_0001446 obo:PHIPO_0001427)

# Class: obo:PHIPO_0001447 (increased level of deoxynivalenol)

AnnotationAssertion(obo:IAO_0000115 obo:PHIPO_0001447 "A single species cell phenotype in which the amount of deoxynivalenol measured in a cell is increased.")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:PHIPO_0001447 "increased level of vomitoxin")
AnnotationAssertion(oboInOwl:hasOBONamespace obo:PHIPO_0001447 "single_species_phenotype")
AnnotationAssertion(oboInOwl:created_by obo:PHIPO_0001447 "changh")
AnnotationAssertion(oboInOwl:creation_date obo:PHIPO_0001447 "2025-04-29T14:22:02Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:PHIPO_0001447 "increased level of vomitoxin")
AnnotationAssertion(oboInOwl:hasOBONamespace obo:PHIPO_0001447 "single_species_phenotype")
AnnotationAssertion(rdfs:label obo:PHIPO_0001447 "increased level of deoxynivalenol"@en)
SubClassOf(obo:PHIPO_0001447 obo:PHIPO_0001037)

# Class: obo:PHIPO_0001448 (restored pathogenicity)

AnnotationAssertion(obo:IAO_0000115 obo:PHIPO_0001448 "A phenotype where the ability of a pathogen to produce an infectious disease in another organism is restored (pathogenicity was present, then absent, and now present).")
AnnotationAssertion(oboInOwl:created_by obo:PHIPO_0001448 "changh")
AnnotationAssertion(oboInOwl:creation_date obo:PHIPO_0001448 "2025-07-14T13:24:34Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:PHIPO_0001448 "pathogen_host_interaction_phenotype")
AnnotationAssertion(oboInOwl:inSubset obo:PHIPO_0001448 "qc_extension_only")
AnnotationAssertion(rdfs:comment obo:PHIPO_0001448 "For use in the annotation extension infective ability. Can only apply to changes in the pathogen. Note that this ability to cause pathogenicity is a feature of the pathogen. Therefore restoration of pathogenicity should never be dependent on changes to the host genotype, only on changes to the pathogen genotype. If you are annotating changes in disease presence or absence dependent on the changes to the host consider increased/decreased virulence phenotypes.")
AnnotationAssertion(rdfs:label obo:PHIPO_0001448 "restored pathogenicity"@en)
SubClassOf(obo:PHIPO_0001448 obo:PHIPO_0000006)


)