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Replace chebi slim URL #443

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Merged
jseager7 merged 1 commit into from
Jan 19, 2026
Merged

Replace chebi slim URL #443

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4 changes: 2 additions & 2 deletions src/ontology/Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@
# More information: https://github.com/INCATools/ontology-development-kit/

# Fingerprint of the configuration file when this Makefile was last generated
CONFIG_HASH= d0646d2fa89bd516609a5cbfd725d1ec0b2aecb60e44936633b4b413b14ffcb5
CONFIG_HASH= ad3cf1e66cccbce8093c8c2e725f6bdd1d998360097fb54ac1bb659a5c9d1dfc


# ----------------------------------------
Expand Down Expand Up @@ -484,7 +484,7 @@ mirror-ro: | $(TMPDIR)
.PHONY: mirror-chebi
.PRECIOUS: $(MIRRORDIR)/chebi.owl
mirror-chebi: | $(TMPDIR)
$(ROBOT) remove -I https://raw.githubusercontent.com/obophenotype/chebi_obo_slim/main/chebi_slim.owl --base-iri http://purl.obolibrary.org/obo/CHEBI --axioms external --preserve-structure false --trim false -o $(TMPDIR)/$@.owl
$(ROBOT) remove -I http://purl.obolibrary.org/obo/upheno/chebi_slim.owl --base-iri http://purl.obolibrary.org/obo/CHEBI --axioms external --preserve-structure false --trim false -o $(TMPDIR)/$@.owl


## ONTOLOGY: pato
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2 changes: 1 addition & 1 deletion src/ontology/phipo-odk.yaml
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Expand Up @@ -25,7 +25,7 @@ import_group:
- id: ro
- id: chebi
make_base: TRUE
mirror_from: https://raw.githubusercontent.com/obophenotype/chebi_obo_slim/main/chebi_slim.owl
mirror_from: http://purl.obolibrary.org/obo/upheno/chebi_slim.owl
- id: pato
- id: so
- id: cl