Issues

• DOE: archive notice requested

  PNNL-Predictive-Phenomics/concerto#32 · Filter by author GitBytes opened on Jun 30, 2026

• partition and account hard coded in run_at_folder_of_array_sbatch.py

  enhancement
  PNNL-Predictive-Phenomics/concerto#31 · Filter by author winatony opened on Oct 24, 2024
  

• chai1 jobs fail with i/o error, seem to successfully create output files though

  PNNL-Predictive-Phenomics/concerto#30 · Filter by author winatony opened on Oct 24, 2024
  3

  

• Incorporate protein structure prediction

  PNNL-Predictive-Phenomics/concerto#25 · Filter by author djinnome opened on Oct 14, 2024
  6

  

• Ref Issue #6: moved files to test directory, tests do not pass

  PNNL-Predictive-Phenomics/concerto#23 · Filter by author tiekneeshrimp opened on Sep 18, 2024
  2

• Prepare models for gapfilling on Biolog

  PNNL-Predictive-Phenomics/concerto#22 · Filter by author djinnome opened on Sep 17, 2024

• Define vivarium interface for carbstor community based on observed exchanged metabolites

  PNNL-Predictive-Phenomics/concerto#19 · Filter by author djinnome opened on Aug 28, 2024
  

• Merge Tesia and Victor's changes into concerto

  PNNL-Predictive-Phenomics/concerto#17 · Filter by author djinnome opened on Aug 27, 2024
  

• Combine consumer resource kinetic model with calcium carbonate kinetic model

  PNNL-Predictive-Phenomics/concerto#13 · Filter by author djinnome opened on Aug 19, 2024
  

• Combine consumer resource FVA model with calcium carbonate FBA model

  PNNL-Predictive-Phenomics/concerto#12 · Filter by author djinnome opened on Aug 19, 2024
  

• Create a consumer resource FBA model

  PNNL-Predictive-Phenomics/concerto#11 · Filter by author djinnome opened on Aug 19, 2024
  

• Combine calcium carbonate FBA model with community genome-scale FBA models

  PNNL-Predictive-Phenomics/concerto#10 · Filter by author djinnome opened on Aug 19, 2024
  

• Refactor helpers so that the CarbStor community is downloaded

  PNNL-Predictive-Phenomics/concerto#5 · Filter by author djinnome opened on Jul 2, 2024
  

• revisit install instructions

  PNNL-Predictive-Phenomics/concerto#4 · Filter by author djinnome opened on Jul 2, 2024
  3