Issues

• DOE: archive notice requested

  PNNL-Predictive-Phenomics/emll#35 · Filter by author GitBytes opened on Jun 30, 2026

• Automatically handle subsets of multi-omics modalities

  PNNL-Predictive-Phenomics/emll#33 · Filter by author djinnome opened on Mar 7, 2025

• update install configuration

  PNNL-Predictive-Phenomics/emll#32 · Filter by author augeorge opened on Feb 15, 2025
  

• Update to UV

  enhancement
  PNNL-Predictive-Phenomics/emll#30 · Filter by author mcnaughtonadm opened on Jan 21, 2025

• Create_Ey_matrix only includes medium metabolites and not the bioproduct by default

  PNNL-Predictive-Phenomics/emll#28 · Filter by author djinnome opened on Oct 7, 2024

• Unable to use emll to get correct elasticity values on a model with ground truth values

  PNNL-Predictive-Phenomics/emll#24 · Filter by author janisshin opened on Jul 2, 2024
  14

  

• Scan operation causing significant overhead

  bug
  PNNL-Predictive-Phenomics/emll#23 · Filter by author mcnaughtonadm opened on May 22, 2024
  8

• Integration Test for Data model integration tools

  enhancement
  PNNL-Predictive-Phenomics/emll#21 · Filter by author mcnaughtonadm opened on May 16, 2024
  

• shape mismatch issues when running ADVI

  bug
  PNNL-Predictive-Phenomics/emll#16 · Filter by author janisshin opened on Apr 26, 2024
  13

  

• Automate the conversion of COBRA models into stoichiometric matrix for Bayesian MCA

  PNNL-Predictive-Phenomics/emll#15 · Filter by author djinnome opened on Apr 25, 2024
  1

• Model in Wu et al unit test is inconsistent with model in Wu et al notebook

  PNNL-Predictive-Phenomics/emll#10 · Filter by author djinnome opened on Mar 9, 2024
  6

  

• Unit tests to validate the prior predictive for wu2004, contador and hackett

  PNNL-Predictive-Phenomics/emll#9 · Filter by author djinnome opened on Feb 20, 2024
  

• Outline the Data Requirements of BMCA

  documentation
  PNNL-Predictive-Phenomics/emll#8 · Filter by author mcnaughtonadm opened on Feb 6, 2024
  

• Fix Test Models

  bug
  PNNL-Predictive-Phenomics/emll#5 · Filter by author mcnaughtonadm opened on Jan 30, 2024

• Reproduction error on hackett.ipynb

  bug
  PNNL-Predictive-Phenomics/emll#4 · Filter by author mcnaughtonadm opened on Jan 30, 2024

• Prepare codebase for use with tox

  enhancement
  PNNL-Predictive-Phenomics/emll#3 · Filter by author mcnaughtonadm opened on Jan 30, 2024
  

• Break run_hackett_inference.py into methods

  enhancement
  PNNL-Predictive-Phenomics/emll#2 · Filter by author mcnaughtonadm opened on Jan 30, 2024
  

• Refactor run_hackett to generalize its handling of incomplete/missing data

  PNNL-Predictive-Phenomics/emll#1 · Filter by author djinnome opened on Jan 28, 2024
  1