Repository of opentargets scripts to postprocess output from MaxQuant and DIA-NN.
For DDA/TMT/iTRAQ from MaxQuant use: OpenTargets_dataset_Summary_reportfile.py
For DIA from DIA-NN use: OpenTargets_DIA_Summary_report.py
Raw and postprocessed data: https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/otargets/