"Genome_annotation" - the latest (2020) update for a genome annotation task. + "Drawing a genome GC landscape" script.
A simple script to find ORFs in non-circle DNA sequence
This script is the part of bioengineering and bioinformatics faculty python programming cource.
The script provides analysis of non-circle DNA sequences showing basic information about nucleotide and amino acid patterns.
Make sure that you have installed:
- Python 3.6 or upper https://www.python.org/
- Matplotlib https://matplotlib.org/2.2.0/users/installing.html
First of all you have to clone this directory
git clone https://github.com/Pavel-Kravchenko/ORF_finder/
Then cd in ORF_finder
cd ORF_finder
And tar ORF_finder.tar.gz
tar -xvf ORF_finder.tar.gz
Now you can use it with single fasta sequence
python ORF_finder.py
or work in jupyter notebook ORF_finder.ipynb
You may want to use it with several sequences. Read commented space in program file and rewrite adding a simple cycle.
Feel free to contact me for any suggestions or critique.
Email: pavel-kravchenk0[@]yandex[dot]ru