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@PoonLab

PoonLab

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  1. covizu covizu Public

    Rapid analysis and visualization of coronavirus genome variation

    JavaScript 48 20

  2. sierra-local sierra-local Public

    Retrieve HIVdb algorithm as XML and apply locally to HIV sequences

    Python 13 8

  3. bayroot bayroot Public

    Bayesian root-to-tip regression for dating reservoir sequences

    R 7 3

  4. HexSE HexSE Public

    Simulation of molecular evolution with overlapping reading frames

    Python 4 2

  5. clustuneR clustuneR Public

    Implementing clustering algorithms on genetic data and finding optimal parameters through the performance of predictive growth models.

    R

  6. fluclades fluclades Public

    Genetic taxonomy of influenza A virus subtypes

    Python 3

Repositories

Showing 10 of 38 repositories
  • twt Public

    Generic framework for the coalescent simulation of pathogen trees within host trees in R

    PoonLab/twt’s past year of commit activity
    R 3 AGPL-3.0 2 23 0 Updated Jan 24, 2026
  • covizu Public

    Rapid analysis and visualization of coronavirus genome variation

    PoonLab/covizu’s past year of commit activity
    JavaScript 48 MIT 20 11 6 Updated Jan 22, 2026
  • sierra-local Public

    Retrieve HIVdb algorithm as XML and apply locally to HIV sequences

    PoonLab/sierra-local’s past year of commit activity
    Python 13 GPL-3.0 8 8 (1 issue needs help) 1 Updated Jan 19, 2026
  • surfaces Public

    Do surface-exposed virus proteins have higher dN/dS?

    PoonLab/surfaces’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 3, 2025
  • OpenRDP Public

    An open-source re-implementation of the RDP4 recombination detection program

    PoonLab/OpenRDP’s past year of commit activity
    Python 3 GPL-3.0 1 14 0 Updated Aug 23, 2025
  • Bioplus Public

    In-house scripts that extend the functionality of Biopython

    PoonLab/Bioplus’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 29, 2025
  • bayroot Public

    Bayesian root-to-tip regression for dating reservoir sequences

    PoonLab/bayroot’s past year of commit activity
    R 7 MIT 3 0 0 Updated Feb 27, 2025
  • tragula Public

    Mapping networks of shared research expertise by word embedding analysis

    PoonLab/tragula’s past year of commit activity
    Python 0 MIT 0 3 0 Updated Feb 3, 2025
  • gromstole Public

    Quantifying SARS-CoV-2 VoCs from NGS data of wastewater samples

    PoonLab/gromstole’s past year of commit activity
    Python 3 MIT 4 7 (1 issue needs help) 0 Updated Jul 18, 2024
  • PoonLab/constellations’s past year of commit activity
    Python 0 17 2 0 Updated May 1, 2024

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