Hw4 voskoboinikov#27

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wwoskie wants to merge 64 commits into

Python-BI-2023:mainfrom

wwoskie:HW4_Voskoboinikov

Commits on Sep 30, 2023

Initial commit
Aleksandr Voskoboinikov
committed
Add const AMINOACID_DICT
ArtemVaska
committed
Add function length_of_protein
ArtemVaska
committed
Add function count_aa
ArtemVaska
committed
Add function get_fracture_of_aa
ArtemVaska
committed
Merge pull request #1 from ArtemVaska/HW4_Vasilev
wwoskie
authored
Add constant H2O_WEIGHT and constant AA_MASS_DICT
ttnlsc
committed
Add function calculate_protein_mass
ttnlsc
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Add constant ATOMIC_MASS
ttnlsc
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Add function get_atomic_mass
ttnlsc
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Add constant AA_NAME_DICT
ttnlsc
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Add function convert_aa_name
ttnlsc
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Merge pull request #2 from ttnlsc/HW4_Lisitsa
wwoskie
authored
Add a photo of the team
ArtemVaska
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Add README.md
ArtemVaska
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Update a link of the photo in README.md
ArtemVaska
authored
Merge pull request #3 from ArtemVaska/HW4_Vasilev
wwoskie
authored
Add RNA_AA_TABLE const
Aleksandr Voskoboinikov
committed
Add RNA_CODON_TABLE const
Aleksandr Voskoboinikov
committed
Add read_seq_from_fasta func
Aleksandr Voskoboinikov
committed
Add get_sites_lengths func
Aleksandr Voskoboinikov
committed
Add invert_dct func
Aleksandr Voskoboinikov
committed
Add find_sites func
Aleksandr Voskoboinikov
committed

Commits on Oct 1, 2023

Add get_protein_rnas func
Aleksandr Voskoboinikov
committed
Add get_protein_rnas_number func
Aleksandr Voskoboinikov
committed
Add is_protein_valid func
Aleksandr Voskoboinikov
committed
Add get_frameshift_proteins func
Aleksandr Voskoboinikov
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Add COMMAND_DCT dictionary
Aleksandr Voskoboinikov
committed
Add run_ultimate_protein_tools func
Aleksandr Voskoboinikov
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Add docstrings for read_seq_from_fasta and get_sites_lengths
Aleksandr Voskoboinikov
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Add docstrings for func invert_dct
Aleksandr Voskoboinikov
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Add docstrings for func is_protein_valid
Aleksandr Voskoboinikov
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Add docstrings for func find_sites
Aleksandr Voskoboinikov
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Add docstring to get_protein_rnas func and make code more polite
Aleksandr Voskoboinikov
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Add docstring to get_protein_rnas_number func
Aleksandr Voskoboinikov
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Add docstring to get_frameshift_proteins func
Aleksandr Voskoboinikov
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Add parse_input func and update run_ultimate_protein_tools
Aleksandr Voskoboinikov
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Update RNA_AA_TABLE and RNA_CODON_TABLE consts with lowercase
Aleksandr Voskoboinikov
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Update docstrings and comments
ArtemVaska
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Add check_all_upper finc and update get_frameshift_proteins
Aleksandr Voskoboinikov
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Change name of function length_of_protein to get_length_of_protein
ArtemVaska
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Fix lowercase recognition
Aleksandr Voskoboinikov
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Update the docstring of function get_fracture_of_aa
ArtemVaska
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Update docstrings of functions calculate_protein_mass, get_atomic_mass, convert_aa_name
ArtemVaska
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Merge branch 'HW4_Voskoboinikov' into HW4_Vasilev
wwoskie
authored
Merge pull request #4 from ArtemVaska/HW4_Vasilev
wwoskie
authored
Merge branch 'HW4_Voskoboinikov' of github.com:ArtemVaska/HW4_Functions2 into HW4_Vasilev
ArtemVaska
committed
Merge pull request #5 from ArtemVaska/HW4_Vasilev
wwoskie
authored
Update command dct and fix *args in count_aa and get_fracture_of_aa
Aleksandr Voskoboinikov
committed
Fix merge conflicts
Aleksandr Voskoboinikov
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Add 2 spaces in some comments instead of 1
ArtemVaska
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Update README.md
ArtemVaska
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Update run_ultimate_protein_tools and command_dct
Aleksandr Voskoboinikov
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Merge pull request #6 from ArtemVaska/HW4_Vasilev
wwoskie
authored
Update typing in consts and some func
Aleksandr Voskoboinikov
committed
Merge branch 'HW4_Voskoboinikov' of github.com:wwoskie/HW4_Functions2 into HW4_Voskoboinikov
Aleksandr Voskoboinikov
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Remove unused AMINOACID_DICT const
Aleksandr Voskoboinikov
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Update parse_input func
Aleksandr Voskoboinikov
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Update get_protein_rnas_number
Aleksandr Voskoboinikov
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Update kwargs in input
Aleksandr Voskoboinikov
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Update run_ultimate_protein_tools
Aleksandr Voskoboinikov
committed
Update README.md
ArtemVaska
authored
Merge pull request #8 from ArtemVaska/HW4_Voskoboinikov
wwoskie
authored
Update README.md
wwoskie
authored