Major PR refactoring the code and making it easily to read / reuse for processing - #2

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QuantitativeBiology:mainfrom

Commits on Dec 14, 2025

First iteration of refacotring from GenerativeProteomics to GainPro
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36a66ef
major updates inside the package
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8416da9
Update GenerativeProteomics/gaindann.py

ypriverol
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Copilot
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db43b53
Update GenerativeProteomics/train.py

ypriverol
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Copilot
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3e54455
Update GenerativeProteomics/gaindann.py

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4dd03e3
Update GenerativeProteomics/imputation_management.py

ypriverol
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98ce525
Merge pull request #1 from bigbio/main
ypriverol
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135c883
notebooks organized
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9f9e466
organize notebooks
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11110db

Commits on Dec 15, 2025

Update README.md

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Copilot
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dbbe64e
update CI/CD
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1a11b8e
Merge branch 'dev' of https://github.com/bigbio/GainPro into dev
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ee72859
consolidate more about gainpro
ypriverol
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e0f8ccc
Update GenerativeProteomics/gainpro.py

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Copilot
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71afc9d
Merge pull request #2 from bigbio/dev
ypriverol
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d79bff9
Major change to GainPro package
ypriverol
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3a80975
Merge branch 'dev' of https://github.com/bigbio/GainPro into dev
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5702ddb
improve the docs
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8d28bb8
Merge branch 'main' of https://github.com/bigbio/GainPro into dev
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5f480d3
minor changes github actions
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2d505c2
Update docs/source/GainPro.manager.rst

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e84a10a
Update docs/source/GainPro.rst

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Copilot
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d0eea52
Merge pull request #3 from bigbio/dev
ypriverol
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eadbe04

Commits on Jan 5, 2026

Merge branch 'main' of https://github.com/QuantitativeBiology/GainPro into dev
ypriverol
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9066cc6
first comment Diogo
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c2b19f2
Second comment from Diogo
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b35781a
minor changes
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9374735
minor change
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bf475e0
Merge pull request #4 from bigbio/dev
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f582067
mor comments from Copilot tackled
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ca47cf4
minor changes
ypriverol
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ac9b65f
Merge branch 'main' of https://github.com/bigbio/GainPro into dev
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9acd5c0
Merge pull request #5 from bigbio/dev
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7897145
Update MANIFEST.in

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9db437e
another small change
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b2e3a31
minor changes also.
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a014d8f
Merge pull request #6 from bigbio/dev
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b8f91cb