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Welcome to the PLUTO Chemistry module wiki!

Prerequisites:

PRIZMO - https://bitbucket.org/tgrassi/prizmo_test/

for the instructions how to set it up check out: https://bitbucket.org/tgrassi/prizmo_test/src/master/README.md

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Steps to run a PLUTO+PRIZMO test case:

• compile PRIZMO
• copy the fortran .f90 and .f files from the main PRIZMO directory to the local directory
• copy the runtime_data directory from the main PRIZMO directory to the local directory
• add in the makefile the following line:

   include $(SRC)/Chemistry/makefile

• add in the definitions.h the following line:

   #define  CHEMISTRY     YES

• (optional) if you want to evolve only the chemistry keeping fix the hydro to obtain more stable initial conditions, add in the definitions.h file the following line:

   #define  DISABLE_HYDRO YES

• use the Darwin.mpicc.defs config file or add to your config file the following lines (if you have ifort):

   FC       = ifort
   FFLAGS   = -O3 -xHost

• compile

   make

• run (in serial)

   ./pluto

• run in parallel (i.e. on 8 cores)

   mpirun -np 8 ./pluto