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Raj-Lab-UCSF/EBM-Nexis-old

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EBM + Nexis + DNN
EBM + Nexis + DNN
 
 
EBM stage + tau
EBM stage + tau
 
 
EBM time series
EBM time series
 
 
Laasya summer project
Laasya summer project
 
 
NDM
NDM
 
 
Other
Other
 
 
Recovered seeds (from SVD)
Recovered seeds (from SVD)
 
 
StaND results
StaND results
 
 
__pycache__
__pycache__
 
 
convergence
convergence
 
 
nexis output
nexis output
 
 
old code
old code
 
 
old data
old data
 
 
other
other
 
 
seed archetype results
seed archetype results
 
 
seed vs. param op
seed vs. param op
 
 
student projects
student projects
 
 
visualization
visualization
 
 
.DS_Store
.DS_Store
 
 
Connectivity matrix.csv
Connectivity matrix.csv
 
 
DK_ROI_volumes.csv
DK_ROI_volumes.csv
 
 
EBM Variance - lambda 0.009.csv
EBM Variance - lambda 0.009.csv
 
 
EBM Variance.csv
EBM Variance.csv
 
 
MODULE 2: Biophysical Inference.ipynb
MODULE 2: Biophysical Inference.ipynb
 
 
Model Seed Op Variance - lambda 0.009.csv
Model Seed Op Variance - lambda 0.009.csv
 
 
Model Seed Op Variance.csv
Model Seed Op Variance.csv
 
 
Model comparison (INCORPORATE INTO MODULE 2).ipynb
Model comparison (INCORPORATE INTO MODULE 2).ipynb
 
 
Model comparison original.ipynb
Model comparison original.ipynb
 
 
Nexis_functions.py
Nexis_functions.py
 
 
Nexis_model_forward original.py
Nexis_model_forward original.py
 
 
Nexis_model_forward.py
Nexis_model_forward.py
 
 
Nexis_model_inverse.py
Nexis_model_inverse.py
 
 
Optimized seed -lambda 0.009.csv
Optimized seed -lambda 0.009.csv
 
 
Optimized seed -lambda adjustment.csv
Optimized seed -lambda adjustment.csv
 
 
README.md
README.md
 
 
Regional tau time series - version 1.csv
Regional tau time series - version 1.csv
 
 
Running_nexis_forward original.ipynb
Running_nexis_forward original.ipynb
 
 
Running_nexis_seedop (ADD TO MODULE 2).ipynb
Running_nexis_seedop (ADD TO MODULE 2).ipynb
 
 
Running_nexis_seedop original.ipynb
Running_nexis_seedop original.ipynb
 
 
Running_nexis_timeop.ipynb
Running_nexis_timeop.ipynb
 
 
minimize() initial vector.csv
minimize() initial vector.csv
 
 

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Nexis code to be run on EBM time series, including forward/inverse and individual/cohort fitting

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