Issues

• Download link broken: rappsilberlab.org domain has expired

  Rappsilber-Laboratory/XiSearch#149 · Filter by author maxochondria opened on Oct 19, 2026
  4

• Low number of DSSO crosslinks and "not enough TT" warning at residue-pair level

  Rappsilber-Laboratory/XiSearch#147 · Filter by author alicecristinadonato-spec opened on Oct 12, 2026

• Potential version mix up with Java

  Rappsilber-Laboratory/XiSearch#145 · Filter by author DennisDannecker opened on Jul 9, 2026
  2

• The fasta parsing rule in XiSearch

  Rappsilber-Laboratory/XiSearch#142 · Filter by author WeiqiangChen opened on Feb 12, 2026
  6

• RAW convert to MGF peak picking Algorithm

  Rappsilber-Laboratory/XiSearch#123 · Filter by author BjoernZiehr opened on Nov 25, 2024
  1

• "Long time without activity "crash out on running mgf files from TIMS, and diagnostic peak inquiry

  Rappsilber-Laboratory/XiSearch#119 · Filter by author derffff2022 opened on Oct 22, 2024
  6

• Produced csv files not compatible with xisearch

  Rappsilber-Laboratory/XiSearch#107 · Filter by author bsakc opened on Jul 3, 2024
  2

• theoretical spectra of crosslinked peptides

  Rappsilber-Laboratory/XiSearch#92 · Filter by author FraenzeMueller opened on Oct 9, 2023
  2

• How to encode non-canonical amino acids into search?

  Rappsilber-Laboratory/XiSearch#90 · Filter by author ciancone94 opened on Aug 31, 2023
  17

• Unparseable number during XiFDR

  Rappsilber-Laboratory/XiSearch#76 · Filter by author aaprap opened on Jan 6, 2023
  5

  

• avoid commas as thousands separator in numbers in csv output

  Rappsilber-Laboratory/XiSearch#63 · Filter by author colin-combe opened on Aug 25, 2022

• Define CDI cleavable crosslinker in xiSEARCH

  Rappsilber-Laboratory/XiSearch#58 · Filter by author GianArauz opened on Jul 21, 2021
  1

• CPU Usage

  Rappsilber-Laboratory/XiSearch#55 · Filter by author jsalbin opened on Jun 2, 2021
  1

• Bruker timsTOF Support

  Rappsilber-Laboratory/XiSearch#54 · Filter by author xLinkKnight opened on Jun 1, 2021
  3

• CSVinFDR fails

  Rappsilber-Laboratory/XiSearch#53 · Filter by author jayieh opened on Sep 9, 2020
  1

• Format of time to finish should be changed to a more sensible output

  Rappsilber-Laboratory/XiSearch#46 · Filter by author lutzfischer opened on Oct 23, 2019

• Config settings for LIT-CID MSMS?

  Rappsilber-Laboratory/XiSearch#45 · Filter by author Alemarcohen opened on Sep 11, 2019
  1

• Viewing non-crosslinked peptides?

  Rappsilber-Laboratory/XiSearch#43 · Filter by author Alemarcohen opened on Sep 5, 2019
  5

• MS2 deisotoping?

  Rappsilber-Laboratory/XiSearch#38 · Filter by author ThomasGossenreiter opened on Jul 8, 2019
  2

• defining diazirine within a peptide ligand

  Rappsilber-Laboratory/XiSearch#32 · Filter by author irahman2 opened on May 16, 2019
  10

• Typo in FragmentTable

  Rappsilber-Laboratory/XiSearch#31 · Filter by author dansteiert opened on Apr 11, 2019
  1

• uniformity with XiFdr -column "Scan"

  Rappsilber-Laboratory/XiSearch#27 · Filter by author dansteiert opened on Oct 23, 2018

• output precursor intensity to csv

  Rappsilber-Laboratory/XiSearch#26 · Filter by author swlenz opened on Oct 18, 2018

• Make glycosylation in cross-linked samples identifiable

  Rappsilber-Laboratory/XiSearch#25 · Filter by author ludsinn opened on Sep 7, 2018

• consistency in file output between programs

  Rappsilber-Laboratory/XiSearch#22 · Filter by author saratenhave opened on Jul 25, 2018
  7