v1.20251218.1.0-beta

What's Changed

Some Highlights

• Management system for ML pipelines, algorithms & processing services
• Improved identification workflow
• User permissions & roles
• Project feature flag system
• Default filters
• Private draft mode for projects
• Data export system
• Visual enhancements for taxa
• Support for order-level taxa ranks
• Experimental support for feature vectors and image clustering
• Taxon reference images
• Tagging system for taxa
• Taxa lists
• Framework for post-processing methods

All Contributions

• Enable users to register Processing Services & Pipelines by @vanessavmac in #632
• ML Pipeline v2 by @mihow in #684
• Improve the lookup & usage of Taxon names by @mihow in #696
• Reset pagination on project tab change by @annavik in #698
• Update styling for identification cards to fit some more information by @annavik in #702
• Updates to collection sampling methods by @mihow in #717
• Remove actual numbers from Related Issues section in PR template by @f-PLT in #711
• Create periodic task to check processing services by @vanessavmac in #704
• Support for order-level taxon ranks & improved search by @mihow in #712
• Allow collections to be filtered by station by @mihow in #740
• Improving status indicators for processing services and pipelines by @vanessavmac in #715
• Streamline project entity columns by @annavik in #744
• Add flower to .gitignore by @annavik in #742
• Framework for User Permissions & Roles by @mohamedelabbas1996 in #693
• Add top species chart to overview page by @vanessavmac in #580
• Handle UI runtime problems reported on Sentry by @annavik in #756
• Interactive API browser, and new filters by @mihow in #762
• Present more job details and allow live updates when processing a single capture by @annavik in #743
• Add page "Code of conduct" to UI by @annavik in #772
• Adjust page size based on page width to avoid gallery gaps by @annavik in #764
• Handle undefined detections by @annavik in #765
• Fix processing service error handling by @vanessavmac in #768
• Fix reprocessing of existing results by @mihow in #719
• Updates to Celery & Flower config by @mihow in #778
• Disable a pipeline for a given project by @vanessavmac in #738
• Update project overview layout by @annavik in #780
• Species of Interest TaxaList Filter by @mohamedelabbas1996 in #777
• Support for a default Pipeline config by @mihow in #784
• Make session info optional for occurrences by @annavik in #794
• Framework for exporting data by @mohamedelabbas1996 in #725
• Make it possible to export data from UI by @annavik in #786
• Fix production build by @mihow in #803
• Update UI for identifications and show multiple suggestions per classification by @annavik in #741
• Make it possible for project managers to manually upload captures by @annavik in #790
• Enable basic type checking for Python by default in VS Code project by @mihow in #792
• New section for algorithms and category maps by @vanessavmac in #785
• Expand support for date formats in image filenames by @mihow in #809
• Implement complete example of an ML backend by @vanessavmac in #798
• Modify docker compose configuration for local development by @f-PLT in #829
• Revert "Modify docker compose configuration for local development" by @mihow in #835
• Improve bulk identification workflow by @mihow in #841
• Adjust default font seen on slow connections by @annavik in #817
• Make it possible to suggest ID in bulk by @annavik in #847
• Update pagination logic by @annavik in #854
• Fix permission denied errors when accessing local files by @mihow in #887
• Show batch processing warning by @annavik in #889
• Include taxa view updates from OOD branch by @annavik in #888
• Improve collection form by @annavik in #800
• Add missing migration by @mohamedelabbas1996 in #897
• Fix deployment sessions creation & counts by @mohamedelabbas1996 in #898
• Tweak collection views by @annavik in #896
• Configure default related models for new projects by @mihow in #905
• Update when event regrouping takes place by @mihow in #908
• Make it possible to add tags to taxa by @annavik in #892
• Advanced collection filters by @mihow in #895
• Make project description optional by @annavik in #914
• Storage and retrieval of project settings by @mihow in #918
• Auto-process manually uploaded images (if enabled) by @mihow in #909
• Check export job status instead of progress by @annavik in #919
• Bring compose file for CI tests into parity with main env by @mihow in #921
• Support re-processing detections and skipping localizer by @vanessavmac in #815
• Permissions based on job type by @mohamedelabbas1996 in #891
• Setup default filters form by @annavik in #929
• Add missing custom permissions for test storage and sync deployment actions by @mohamedelabbas1996 in #932
• Support for draft projects & private draft permissions by @mohamedelabbas1996 in #917
• Make it easier for users to upload and explore captures by @annavik in #943
• Capture tweaks by @annavik in #947
• Add missing migrations by @mihow in #946
• Chore(deps): bump actions/checkout from 4 to 5 by @dependabot[bot] in #935
• Update command for importing taxa from external lists by @mihow in #939
• Make it possible to configure default pipeline from UI by @annavik in #949
• Taxon cover images and external references by @mihow in #940
• Require Algorithms & CategoryMaps to be registered before processing by @mihow in #942
• Enable API root page & path extensions in production by @mihow in #960
• Make it possible to automatically process captures after upload by @annavik in #961
• Chore(deps): bump actions/setup-python from 5 to 6 by @dependabot[bot] in #974
• Quick start tweaks by @annavik in #980
• Pipeline picker updates by @annavik in #979
• Better guide users to export data by @annavik in #983
• Chore(deps): bump actions/setup-node from 4 to 5 by @dependabot[bot] in #973
• Apply score threshold filter by @annavik in #944
• Cleanup and format current info pages by @annavik in #989
• Apply taxa filters by @annavik in #951
• Update terms of service by @annavik in #990
• Add support for species charts by @annavik in #993
• Use taxa list name as page title by @annavik in #1001
• Introduce generic post-processing framework by @mohamedelabbas1996 in https:/...

v1.20250126.1.0-beta

What's Changed

• Load main view and detail view in parallel by @annavik in #521
• Updates for production environment & deployments by @mihow in #524
• Fix pagination bar appearance on info dialog open by @annavik in #530
• Update password reset confirm URL by @annavik in #527
• Updates to the README for getting started by @mihow in #534
• Setup UI for password reset by @annavik in #526
• Make it possible for logged in users to update email and password by @annavik in #525
• Update and clarify logic to fix capture upload duplicates by @annavik in #522
• Only call endpoint /me if user is logged in by @annavik in #537
• Increase performance of Session list view by @mihow in #542
• Add UI to docker compose stack by @mihow in #546
• Implement handling of cookie consent and related logic by @annavik in #544
• Make sure cover images are not overflowing frame by @annavik in #551
• Setup page "Terms of service" by @annavik in #550
• Disable sign up by @annavik in #536
• Fix yarn dependencies for fresh installs by @mihow in #554
• Fix broken thumbnails for detections without crops by @mihow in #555
• Add taxonomy search to occurrence page (+ empty state) by @annavik in #558
• Update terminology by @annavik in #559
• FE cleanup for demo by @annavik in #557
• Make it possible to read version info from env by @annavik in #561
• Update style scheme, logo and metadata by @annavik in #563
• Fixes for demo launch by @mihow in #565
• Show license info for images by @annavik in #566
• Link to landing page from platform by @annavik in #569
• Session details improvements by @annavik in #568
• Frontend workarounds for demo by @annavik in #567
• Configure image backend for detection crops by @mihow in #564
• Small screen adjustments by @annavik in #571
• Fixes for duplicate classifications and other optimizations by @mihow in #573
• fix: keep the oldest classifications not the other way around by @mihow in #574
• Updates to README and initial project setup by @vanessavmac in #552
• Restore search params after login by @annavik in #575
• Filter processed images before each batch is sent by @mihow in #579
• Add taxon search to species table view by @mihow in #578
• Update top species chart by @vanessavmac in #577
• Fix UI container in compose conifg by @mihow in #582
• Fix UI dev container, again by @mihow in #588
• Updates to overview tabs by @annavik in #595
• Make email usernames case-insensitive by @mihow in #592
• Move backend tests into main module by @mihow in #586
• Snap to tick with detections by @annavik in #596
• Ensure that collection querysets always filter from project by @mihow in #587
• Handle captures that have no associated Event / Session by @mihow in #584
• Show a proxy count of images processed in a collection by @mihow in #598
• Save results in a separate background task during processing by @mihow in #599
• Add meta images by @annavik in #600
• Add show detections below threshold setting by @annavik in #602
• Template for an ML backend in the compose stack by @mihow in #576
• Allow filtering occurrences by capture collection by @mihow in #604
• Setup score threshold filter for list views by @annavik in #603
• Lazy load activity plot by @annavik in #606
• Add deprecated styling to environment label by @annavik in #609
• Refactor app to use new UI Kit and update interface for filtering by @annavik in #605
• Use job system to populate capture collections by @mihow in #612
• Remove default classification threshold by @mihow in #613
• New filters for Occurrences by @mihow in #608
• Update wording from "species" -> "taxa" by @annavik in #627
• Use inverted colors for score sliders (+ some refactoring) by @annavik in #620
• Add filter UI to jobs (+ some more job related updates) by @annavik in #626
• Improve initial setup for local dev by @mihow in #631
• fix: missing collections filter by @mihow in #636
• Fix user data form bug by @annavik in #642
• Add new filter "Verified by" and update logic for agreements by @annavik in #644
• Update README for local backend setup by @annavik in #641
• [Hotfix] Handle undefined identifications response by @annavik in #647
• Add missing job filters by @annavik in #645
• Ensure minio and proxy containers are ready before permissions are set by @mihow in #652
• Tweak logout logic to clear token on all types of errors by @annavik in #654
• fix: standardize line-length settings for auto-formatting & checks (python) by @mihow in #653
• Skip detection counts by @annavik in #656
• Add client side error handling to date filters by @annavik in #643
• Make it easier to go to prev/next occurrence by @annavik in #659
• Update filter logic to fix capture collection filtering by @annavik in #661
• Helpful flag for speeding up test development by @mihow in #666
• Handle occurrence detail view tab state as a search param by @annavik in #664
• Renamed project filter query parameter to project_id for Project Summary entities by @mohamedelabbas1996 in #668
• Fix update password form by @annavik in #670
• Add Pull Request Template to the Project by @f-PLT in #674
• Present latest job status in collections table and update populate button logic by @annavik in #657
• hotfix: only reuse test project when intended. by @mihow in #675
• Update issue templates by @f-PLT in #669
• Fix background tasks from disappearing by @mihow in #688
• Fix updates to deployments and session grouping by @mihow in #689
• fix: cannot use storage source for deployments by @mihow in #690
• Disable snap behavior for sessions with no detections by @annavik in #691
• Show occurrence raw data by @annavik in #665
• Make it possible to inspect full occurrence details directly from the session details view by @annavik in #692
• Improve Project-User Management and Accessibility by @mihow in #275

New Contributors

• @vanessavmac made their first contribution in #552
• @mohamedelabbas1996 made their first contribution in #668
• @f-PLT made their first contribution in #674

Full Changelog: https://github.com/RolnickLab/antenna/compare/v...

v1.20240815.1.0-beta

What's Changed

• Complete full stack environment for dev & CI by @mihow in #502
• Fixes & features for higher taxon ranks by @mihow in #496
• Format numbers based on browser locale by @annavik in #497
• Fix custom action for "liking" a source image by @mihow in #500
• Fixes to the session captures timeline data by @annavik and @mihow in #499

Full Changelog: v1.20240806.1.0-beta...v1.20240815.1.0-beta

v1.20240806.1.0-beta

What's Changed

• Taxonomic hierarchy UI by @annavik in #262
• [Minor]: Handle sessions with no captures by @annavik in #282
• Upload example captures from web interface by @annavik in #281
• Source Image Collections API and new sampling methods by @mihow in #283
• Initial support for object detection ML backend by @mihow in #285
• Cleanup translations by @annavik in #287
• Fix sorting in API by @mihow in #291
• Add detailed page titles by @annavik in #288
• Update sorting by @annavik in #293
• Taxonomy import & display v2 by @mihow in #292
• Fix ordering in API by @mihow in #296
• Update pagination by @annavik in #295
• Implement new views for source image collections by @annavik in #300
• Setup job forms by @annavik in #303
• Fix small bugs by @annavik in #305
• API Backend for Background Jobs by @mihow in #306
• Bump actions/setup-node from 3 to 4 by @dependabot in #301
• Playback controls + trigger job for capture + job forms and more! by @annavik in #286
• Migrate from CRA -> Vite + update Storybook + update Yarn by @annavik in #316
• Bump @babel/traverse from 7.21.2 to 7.23.3 in /ui by @dependabot in #319
• Bump @adobe/css-tools from 4.2.0 to 4.3.1 in /ui by @dependabot in #320
• Bump word-wrap from 1.2.3 to 1.2.5 in /ui by @dependabot in #321
• Lazy load Plotly by @annavik in #318
• Resolve semver by @annavik in #322
• Bump semver from 6.3.0 to 6.3.1 in /ui by @dependabot in #323
• Setup UI for pipelines (+ related tweaks) by @annavik in #315
• Prototype of ML backend by @mihow in #312
• New endpoints for Storage Source, Sites & Devices by @mihow in #325
• Setup error boundaries by @annavik in #324
• Add control for marking captures as starred by @annavik in #326
• Initial methods for saving results from ML backend API by @mihow in #327
• Cache and filter counts & scores. Improve determination calculation. by @mihow in #330
• Conditionally enable Sentry by @annavik in #332
• Options for project visibility, speed up session views by @mihow in #334
• Introduce related entities by @annavik in #331
• Show beta info in header by @annavik in #340
• Bump plotly.js from 2.20.0 to 2.25.2 in /ui by @dependabot in #341
• Bump vite from 4.5.0 to 4.5.2 in /ui by @dependabot in #342
• Add device, site and data source to Deployment responses by @mihow in #333
• Make thumbnails clickable by @annavik in #348
• Fix session details navigation by @annavik in #347
• Add Google Analytics by @mihow in #338
• Production environment by @mihow in #349
• Consider job permissions in UI by @annavik in #346
• Make it possible to set deployment image by @annavik in #353
• Container & monitoring tweaks by @mihow in #355
• Filter occurrences & taxa to fix counts and missing related objects by @mihow in #356
• Fixes and tests for backgound Jobs by @mihow in #358
• Fix counts, Don't show occurrences from other projects by @mihow in #359
• Fix incorrect dates of occurrences & detections by @mihow in #360
• Fix timeout on session detail pages with many species by @mihow in #362
• Method to manually approve new users for write operations by @mihow in #363
• Fix various onboarding issues by @mihow in #366
• Small fixes for deployment form logic by @annavik in #367
• Error handling for jobs by @mihow in #368
• Fix missing auth headers when starting job by @mihow in #373
• Initial methods to skip already-processed images. by @mihow in #374
• [AMI-268] Enable comments field when suggesting ID by @mihow in #376
• [AMI-268] Show more algorithm details in occurrence identification history by @mihow in #378
• [AMI-267] Enable collections to be defined & populated from UI by @mihow in #375
• Small tweaks based on feedback by @mihow in #380
• Introduce spelling error by @annavik in #381
• Update README by @annavik in #382
• Fix spelling error by @annavik in #383
• Show softmax score in session detail view by @mihow in #389
• Add automatic query caching by @mihow in #392
• Make visible table links more visible by @annavik in #394
• Make FE code formatting more clear by @annavik in #395
• Fix small UI bugs after feedback by @annavik in #401
• Fix failing pre commit hook by @annavik in #396
• Fix: Support sort params in URL by @annavik in #409
• Fix: Single bar looks very wide by @annavik in #408
• Tweak UI for identifications by @annavik in #417
• Tweak gallery layout for large screens by @annavik in #420
• Small tweaks to deployment location by @annavik in #422
• Bump ejs from 3.1.9 to 3.1.10 in /ui by @dependabot in #433
• Bump braces from 3.0.2 to 3.0.3 in /ui by @dependabot in #434
• Bump tar from 6.2.0 to 6.2.1 in /ui by @dependabot in #435
• Bump vite from 4.5.2 to 4.5.3 in /ui by @dependabot in #436
• Some improvements to table columns (occurrence and species) by @annavik in #429
• Bump express from 4.18.2 to 4.19.2 in /ui by @dependabot in #437
• Fix: Make reject options easy to access by @annavik in #432
• Bump pre-commit/action from 3.0.0 to 3.0.1 by @dependabot in #365
• Bump actions/setup-python from 4 to 5 by @dependabot in #335
• Specify and show default sorting by @annavik in #442
• Update page layout to support new features by @annavik in #444
• Small UI tweaks by @annavik in #441
• Add pagination to project page by @annavik in #449
• Make applied filters more visible in UI by @annavik in #448
• Agree to rank by @annavik in #450
• Add tooltips to page header by @annavik in #454
• Handle missing capture size by @annavik in #459
• Pass auth header when calling cancel job by @annavik in #458
• Allow data sources to be synced from the UI by @mihow in https...

v1.20240129.1.0-beta

First beta release of hosted platform for initial feedback

What's Changed

• Taxonomic hierarchy by @annavik in #262
• [Minor]: Handle sessions with no captures by @annavik in #282
• Upload example captures from web interface by @annavik in #281
• Source Image Collections API and new sampling methods by @mihow in #283
• Initial support for object detection ML backend by @mihow in #285
• Cleanup translations by @annavik in #287
• Fix sorting in API by @mihow in #291
• Add detailed page titles by @annavik in #288
• Update sorting by @annavik in #293
• Taxonomy import & display v2 by @mihow in #292
• Fix ordering in API by @mihow in #296
• Update pagination by @annavik in #295
• Implement new views for source image collections by @annavik in #300
• Setup job forms by @annavik in #303
• Fix small bugs by @annavik in #305
• API Backend for Background Jobs by @mihow in #306
• Bump actions/setup-node from 3 to 4 by @dependabot in #301
• Playback controls + trigger job for capture + job forms and more! by @annavik in #286
• Migrate from CRA -> Vite + update Storybook + update Yarn by @annavik in #316
• Bump @babel/traverse from 7.21.2 to 7.23.3 in /ui by @dependabot in #319
• Bump @adobe/css-tools from 4.2.0 to 4.3.1 in /ui by @dependabot in #320
• Bump word-wrap from 1.2.3 to 1.2.5 in /ui by @dependabot in #321
• Lazy load Plotly by @annavik in #318
• Resolve semver by @annavik in #322
• Bump semver from 6.3.0 to 6.3.1 in /ui by @dependabot in #323
• Setup UI for pipelines (+ related tweaks) by @annavik in #315
• Prototype of ML backend by @mihow in #312
• New endpoints for Storage Source, Sites & Devices by @mihow in #325
• Setup error boundaries by @annavik in #324
• Add control for marking captures as starred by @annavik in #326
• Initial methods for saving results from ML backend API by @mihow in #327
• Cache and filter counts & scores. Improve determination calculation. by @mihow in #330
• Conditionally enable Sentry by @annavik in #332
• Options for project visibility, speed up session views by @mihow in #334
• Introduce related entities by @annavik in #331
• Show beta info in header by @annavik in #340

Full Changelog: v0.20231013.1.0...v1.20240129.1.0-beta

Demo for GEO BON conference in Montreal, Canada

Demo presented at GEO BON Global Conference: Monitoring Biodiversity for Action.

https://www.youtube.com/watch?v=IYEoFuzQNtU

What's Changed

• Label Studio integration & taxonomy models by @mihow in #202
• Tweak project map by @annavik in #204
• Investigate issues in session details by @annavik in #205
• Skip proxy and update geo search URL by @annavik in #210
• Add projects to page hierachy by @annavik in #211
• Import Captures from S3 Data Storage by @mihow in #203
• Add project relationship to additional models by @mihow in #213
• Add endpoints for user authentication by @mihow in #218
• Move "create" permission to the collection/list view by @mihow in #222
• Methods and URL for sampling captures based on time interval by @mihow in #223
• Update how dimensions for imported images are set by @mihow in #227
• Implement auth on FE by @annavik in #221
• Query speedups by @mihow in #228
• Refactor handling of app routes by @annavik in #231
• Update users endpoints to use Djoser only by @mihow in #234
• Add user profile image by @mihow in #235
• Add unit tests for auth related code by @annavik in #238
• Update auth URLs by @mihow in #240
• Tweak logic for register new deployment by @annavik in #230
• Setup user info form by @annavik in #232
• Updates to build triggers by @mihow in #246
• Update example taxon schema by @adityajain07 in #243
• Add master checklist taxa file for label studio by @adityajain07 in #244
• Update taxonomy import by @mihow in #247
• Models, views & serializes dedicated to Label Studio integration by @mihow in #245
• Tweak profile image UI by @annavik in #248
• Initial models & endpoints for human identifications by @mihow in #241
• Setup UI for identifications by @annavik in #214
• Taxa search API by @mihow in #249
• Identifications part 2 by @annavik in #250
• Taxon search tweaks by @annavik in #255
• Remove unused user agreement check on backend by @mihow in #256
• Fix bug with "About" and "Help" buttons by @annavik in #267
• Make it possible to inspect job details by @annavik in #268
• Bump actions/checkout from 3 to 4 by @dependabot in #261
• Pass "agreed with" params (if applicable) when creating an identification by @annavik in #266
• Setup (more) generic form helpers by @annavik in #269
• Setup project forms by @annavik in #270
• Update FE README by @annavik in #276
• [Minor]: Fix delete permission for projects by @annavik in #277
• [Minor]: Add taxon ranks to species details view by @annavik in #278
• Make it possible to delete deployment by @annavik in #271

New Contributors

• @adityajain07 made their first contribution in #243

Full Changelog: v0.20230806.1.0...v0.20231013.1.0

Demo for ESA 2023 in Portland, OR

What's Changed

• Setup and use React Query by @annavik in #146
• Add favicons by @annavik in #147
• Deployment details + map component by @annavik in #152
• Setup deployment forms (+ define some generic form patterns) by @annavik in #158
• New combo box components + more advanced map features by @annavik in #161
• Web UI source images by @annavik in #162
• Capture picker by @annavik in #176
• Update to new installation method for Poetry by @mihow in #178
• Change backend to use Django Rest Framework by @mihow in #179
• Setup interface for jobs by @annavik in #177
• Consume API v.2 by @annavik in #181
• Remove settings by @annavik in #182
• Initial models and API endpoints by @mihow in #180
• Nested detections in event capture list API response by @mihow in #183
• Update UI for occurrence details by @annavik in #184
• Filtering and adding more data by @annavik in #185
• Mixed UI tweaks by @annavik in #186
• Infinte scroll captures by @annavik in #187
• Additional data for projects & sessions by @mihow in #189
• Real project data and loading states by @annavik in #188
• Add initial job models & endpoints by @mihow in #190
• Hook up jobs with BE by @annavik in #191
• Mixed fixes for FE by @annavik in #192
• Small plot tweaks by @annavik in #194
• Link to a specific capture in session detail view by @annavik in #195
• Add some adjustments for small screens by @annavik in #197
• Add basic Page model and endpoints by @mihow in #199
• Add logo and info pages by @annavik in #200
• Control info dialogs from URL by @annavik in #201

Full Changelog: v0.20230419.1.0...v0.20230806.1.0

Demo at AMI meeting at UKCEH in Wallingford, UK

Quick demo of original desktop application: https://www.youtube.com/watch?v=DCPkxM_PvdQ
Walkthrough of initial desktop application with captions: https://www.youtube.com/watch?v=6TACr2iv9bU

No recorded demo of initial web-based platform available.

What's Changed

• Setup web app for AMI Platform by @annavik in #74
• Setup web app table views by @annavik in #76
• Redirect all paths to the SPA root by @mihow in #78
• Further develop web app table views by @annavik in #79
• Update project template by @mihow in #90
• Settings page and layout tweaks by @annavik in #94
• Introduce API calls, server side sorting and pagination by @annavik in #96
• Some table view tweaks for demo by @annavik in #103
• Setup session details view by @annavik in #114
• Show detection ids and some additional UI tweaks by @annavik in #115
• Replace fake API with real API by @annavik in #123
• Minor tweaks for data layer by @annavik in #124
• Add breadcrumbs by @annavik in #125
• Setup species table by @annavik in #128
• Setup overview page with some example plots by @annavik in #127
• Add occurrence details dialog by @annavik in #126

Full Changelog: https://github.com/RolnickLab/ami-platform/commits/v0.20230419.1.0