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@RomeroLab

Romero Lab

Romero Lab at Duke University

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  1. omega omega Public

    OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."

    Python 37 11

  2. RLXF RLXF Public

    Consolidated repository to perform RLXF

    Jupyter Notebook 36 1

  3. ML-Guided-Acyl-ACP-Reductase-Engineering ML-Guided-Acyl-ACP-Reductase-Engineering Public

    Repository containing scripts and analysis for ML-Guided Acyl-ACP Reductase Engineering paper

    Jupyter Notebook 11 4

  4. schemarecomb schemarecomb Public

    Design chimeric protein libraries with Golden Gate Assembly.

    Python 7 5

  5. dhfr_neutral_evolution dhfr_neutral_evolution Public

    Jupyter Notebook 6 1

  6. SAMPLE_code SAMPLE_code Public

    Jupyter Notebook 6 1

Repositories

Showing 10 of 22 repositories
  • RLXF Public

    Consolidated repository to perform RLXF

    RomeroLab/RLXF’s past year of commit activity
    Jupyter Notebook 36 Apache-2.0 1 0 0 Updated Feb 5, 2026
  • omega Public

    OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."

    RomeroLab/omega’s past year of commit activity
    Python 37 GPL-3.0 11 1 0 Updated Nov 18, 2025
  • scalable-gene-assembly Public

    Data analysis and figures for OMEGA publication.

    RomeroLab/scalable-gene-assembly’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 18, 2025
  • METL_Rosetta Public

    Repo with command line and PyRosetta code to compute a JSON dictionary containing two-body and one-body energy terms for a given model system

    RomeroLab/METL_Rosetta’s past year of commit activity
    Python 0 0 0 0 Updated Jul 22, 2025
  • finetuning_esm2 Public

    Setting up generalizable repository to finetune esm2 models

    RomeroLab/finetuning_esm2’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Apr 1, 2025
  • nn-extrapolation Public

    Neural network extrapolation to distant regions of the protein fitness landscape

    RomeroLab/nn-extrapolation’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 0 0 Updated Jun 24, 2024
  • nn4dms_nn-extrapolate Public Forked from gitter-lab/nn4dms

    Neural networks for deep mutational scanning data

    RomeroLab/nn4dms_nn-extrapolate’s past year of commit activity
    Jupyter Notebook 0 MIT 18 0 0 Updated Jun 24, 2024
  • nn-extrapolation-models Public

    Pretrained models used in nn-extrapolation.

    RomeroLab/nn-extrapolation-models’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jun 3, 2024
  • ML-Guided-Acyl-ACP-Reductase-Engineering Public

    Repository containing scripts and analysis for ML-Guided Acyl-ACP Reductase Engineering paper

    RomeroLab/ML-Guided-Acyl-ACP-Reductase-Engineering’s past year of commit activity
    Jupyter Notebook 11 GPL-3.0 4 2 0 Updated Nov 21, 2023
  • SAMPLE_code Public
    RomeroLab/SAMPLE_code’s past year of commit activity
    Jupyter Notebook 6 1 0 0 Updated Oct 27, 2023
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