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Update six compatible dependencies and align verified source manifests - #17
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Bumps the compatible-patches group with 4 updates in the / directory: [certifi](https://github.com/certifi/python-certifi), [pymupdf](https://github.com/pymupdf/pymupdf), [bm25s](https://github.com/xhluca/bm25s) and [cryptography](https://github.com/pyca/cryptography). Bumps the compatible-patches group with 4 updates in the /packaging directory: [certifi](https://github.com/certifi/python-certifi), [pymupdf](https://github.com/pymupdf/pymupdf), [bm25s](https://github.com/xhluca/bm25s) and [cryptography](https://github.com/pyca/cryptography). Bumps the compatible-patches group with 7 updates in the /packaging/store/native-recipes directory: | Package | From | To | | --- | --- | --- | | [certifi](https://github.com/certifi/python-certifi) | `2026.10.19` | `2026.10.23` | | [bm25s](https://github.com/xhluca/bm25s) | `0.3.10` | `0.3.16` | | [cmake](https://github.com/scikit-build/cmake-python-distributions) | `4.4.3` | `4.4.4` | | [delvewheel](https://github.com/adang1345/delvewheel) | `1.13.1` | `1.13.2` | | [iniconfig](https://github.com/pytest-dev/iniconfig) | `2.3.0` | `2.3.1` | | [numpy](https://github.com/numpy/numpy) | `2.5.3` | `2.5.4` | | [tomlkit](https://github.com/python-poetry/tomlkit) | `0.15.1` | `0.15.2` | Updates `certifi` from 2026.10.19 to 2026.10.23 - [Commits](certifi/python-certifi@2026.10.19...2026.10.23) Updates `pymupdf` from 1.28.0 to 1.28.2 - [Release notes](https://github.com/pymupdf/pymupdf/releases) - [Changelog](https://github.com/pymupdf/PyMuPDF/blob/main/changes.txt) - [Commits](pymupdf/PyMuPDF@1.28.0...1.28.2) Updates `bm25s` from 0.3.10 to 0.3.16 - [Release notes](https://github.com/xhluca/bm25s/releases) - [Commits](xhluca/bm25s@0.3.10...0.3.16) Updates `cryptography` from 50.0.1 to 50.0.2 - [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst) - [Commits](pyca/cryptography@50.0.1...50.0.2) Updates `certifi` from 2026.10.19 to 2026.10.23 - [Commits](certifi/python-certifi@2026.10.19...2026.10.23) Updates `pymupdf` from 1.28.0 to 1.28.2 - [Release notes](https://github.com/pymupdf/pymupdf/releases) - [Changelog](https://github.com/pymupdf/PyMuPDF/blob/main/changes.txt) - [Commits](pymupdf/PyMuPDF@1.28.0...1.28.2) Updates `bm25s` from 0.3.10 to 0.3.16 - [Release notes](https://github.com/xhluca/bm25s/releases) - [Commits](xhluca/bm25s@0.3.10...0.3.16) Updates `cryptography` from 50.0.1 to 50.0.2 - [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst) - [Commits](pyca/cryptography@50.0.1...50.0.2) Updates `certifi` from 2026.10.19 to 2026.10.23 - [Commits](certifi/python-certifi@2026.10.19...2026.10.23) Updates `bm25s` from 0.3.10 to 0.3.16 - [Release notes](https://github.com/xhluca/bm25s/releases) - [Commits](xhluca/bm25s@0.3.10...0.3.16) Updates `cmake` from 4.4.3 to 4.4.4 - [Release notes](https://github.com/scikit-build/cmake-python-distributions/releases) - [Changelog](https://github.com/scikit-build/cmake-python-distributions/blob/main/HISTORY.rst) - [Commits](scikit-build/cmake-python-distributions@4.4.3...4.4.4) Updates `delvewheel` from 1.13.1 to 1.13.2 - [Changelog](https://github.com/adang1345/delvewheel/blob/master/CHANGELOG.md) - [Commits](https://github.com/adang1345/delvewheel/commits) Updates `iniconfig` from 2.3.0 to 2.3.1 - [Release notes](https://github.com/pytest-dev/iniconfig/releases) - [Changelog](https://github.com/pytest-dev/iniconfig/blob/main/CHANGELOG) - [Commits](pytest-dev/iniconfig@v2.3.0...v2.3.1) Updates `numpy` from 2.5.3 to 2.5.4 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v2.5.3...v2.5.4) Updates `tomlkit` from 0.15.1 to 0.15.2 - [Release notes](https://github.com/python-poetry/tomlkit/releases) - [Changelog](https://github.com/python-poetry/tomlkit/blob/master/CHANGELOG.md) - [Commits](python-poetry/tomlkit@0.15.1...0.15.2) --- updated-dependencies: - dependency-name: certifi dependency-version: 2026.10.23 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: pymupdf dependency-version: 1.28.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: bm25s dependency-version: 0.3.16 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: cryptography dependency-version: 50.0.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: certifi dependency-version: 2026.10.23 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: pymupdf dependency-version: 1.28.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: bm25s dependency-version: 0.3.16 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: cryptography dependency-version: 50.0.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: certifi dependency-version: 2026.10.23 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: bm25s dependency-version: 0.3.16 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: cmake dependency-version: 4.4.4 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: delvewheel dependency-version: 1.13.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: iniconfig dependency-version: 2.3.1 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: numpy dependency-version: 2.5.4 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches - dependency-name: tomlkit dependency-version: 0.15.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: compatible-patches ... 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Updates certifi to 2026.10.23, PyMuPDF to 1.28.2, delvewheel to 1.13.2, iniconfig to 2.3.1, the native bootstrap environment's NumPy to 2.5.4, and tomlkit to 0.15.2.
Aligns the PyMuPDF/MuPDF source archive URLs and SHA-256 digests with version 1.28.2, using verified official upstream metadata. Updates the active certifi constraint regression expectation.
Retains BM25s 0.3.10, cryptography 50.0.1, and CMake 4.4.3 to preserve the existing deterministic retrieval contract and qualified native source/tool inputs. The application's NumPy constraint remains 2.5.3, distinct from the bootstrap environment.
Validation: the five previously failing tests pass; bootstrap/desktop packaging modules have 125 passed and 1 skipped; PyMuPDF runtime checks have 85 passed and 2 skipped. The final patch and its integration with the CLA prerequisite were independently reviewed. Fresh Windows/Ubuntu CI and the CLA gate must pass for the final head before merge.
This maintenance updates source only. Application packages, release tags, and existing native caches remain unchanged.