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Sajib-006/README.md

Sajib Acharjee Dip

I am a Computer Science Ph.D. student at Virginia Tech working at the intersection of machine learning and biology. My research spans computational pathology, single-cell and perturbation modeling, multimodal learning, and scientific AI agents.

Academic website · Google Scholar · ORCID · ResearchGate · LinkedIn

Featured ACM BCB 2026 research

Patch-Level Tissue Context

Patch-Level Tissue Context Improves Learning from Frozen Pathology Foundation Model Embeddings studies lightweight tissue-context fusion across frozen Prov-GigaPath, Virchow2, and DINOv2 embeddings.

Paper · Code · Project page

Stable-Shift

Stable-Shift: Predicting Transcriptional Responses of Unseen Gene Perturbations Using Graph Neural Networks with Biological Priors combines low-rank response programs with STRING interactions, expression features, graph structure, and Gene Ontology priors.

Paper · Preprint · Code · Project page

Collaboration

I am interested in cross-center pathology validation, tissue-neighborhood modeling, unseen-perturbation benchmarks, multimodal biological learning, and evidence-grounded scientific agents.

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  1. Patho-LM Patho-LM Public

    [MLCB 2024] [ICML AI4Science 2024] PathoLM: Identifying pathogenicity from the DNA sequence through the Genome Foundation Model

    Python 7 3

  2. equi-derm equi-derm Public

    [MI4EGH: AAAI Fall Symposium 2024] Transfer Learning and Domain Adaptation for Equitable Skin Disease Prediction

    Jupyter Notebook 1

  3. hasanar1f/PAINT hasanar1f/PAINT Public

    [CVPR 2025 Workshop] PAINT (Paying Attention to INformed Tokens) is a plug-and-play framework that intervenes in the self-attention of the LLM and selectively boost the visual attention informed to…

    Python 20

  4. UnCOT-AD UnCOT-AD Public

    Forked from abrarrahmanabir/UnCOT-AD

    Python

  5. Java_Two_Player_Online_Shooting_Game Java_Two_Player_Online_Shooting_Game Public

    Java

  6. CFM-GP CFM-GP Public

    Forked from abrarrahmanabir/CFM-GP

    Python