Sarder Lab
- 24 followers
- United States of America
- pinaki.sarder@ufl.edu
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Repositories
- prop-fusion-gene-expression-overlay Public
Proposal to prepare and visualize per-cell gene expression data from Xenium Ranger output overlaid on co-registered H&E whole slide images (WSI) in the FUSION 2.0 pipeline.
SarderLab/prop-fusion-gene-expression-overlay’s past year of commit activity - prop-spot-annotation Public
Proposal of how to add grouped cell type annotations to a Seurat RDS file output by the FUSION label transfer step, as a precursor to spot annotation. This is a demo codebase and not a production plugin.
SarderLab/prop-spot-annotation’s past year of commit activity - fusion-packages Public
Python package distributions built from fusion repositories and utility functions
SarderLab/fusion-packages’s past year of commit activity - Spatial-Omics-Plugins Public
SarderLab/Spatial-Omics-Plugins’s past year of commit activity - CombinedFeatureExtraction Public
SarderLab/CombinedFeatureExtraction’s past year of commit activity - HistoLens Public
SarderLab/HistoLens’s past year of commit activity - procurement-biopsy-pathomics-ml Public Forked from jeremysrubin/procurement-biopsy-pathomics-ml
Code used for training and testing machine learning models with donor clinical and pathomic biopsy features to predict kidney transplant recipient outcomes for paper in preparation titled: "Multimodal ComPRePS: Integrating High-dimensional Procurement Biopsy Pathomics and Clinical Data for Prediction of Allograft Outcomes"
SarderLab/procurement-biopsy-pathomics-ml’s past year of commit activity
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