Issues

• Empty SM tag in BAM header

  Sydney-Informatics-Hub/RNASeq-DE#12 · Filter by author calizilla opened on Apr 18, 2025

• Archive RNAseq-DE

  rnaseq
  Sydney-Informatics-Hub/RNASeq-DE#10 · Filter by author georgiesamaha opened on Dec 12, 2024

• read_distribution.sh remove STDERR log redirect

  Sydney-Informatics-Hub/RNASeq-DE#9 · Filter by author calizilla opened on May 23, 2024

• Issue for some samples wth multiple fastq pairs

  enhancement
  Sydney-Informatics-Hub/RNASeq-DE#8 · Filter by author calizilla opened on Apr 25, 2024

• Move set -e in run parallel scripts to after directives

  bug
  Sydney-Informatics-Hub/RNASeq-DE#7 · Filter by author calizilla opened on Apr 24, 2024
  

• tpmcalculator_make_matrix.pbs returning empty TPM_GeneLevel.counts & TPM_TranscriptLevel.counts

  Sydney-Informatics-Hub/RNASeq-DE#6 · Filter by author NJNataren opened on Mar 20, 2024

• bam_stat_make_input.sh bug - creating incorrect entry in the /Inputs/bam_stat.inputs file

  Sydney-Informatics-Hub/RNASeq-DE#5 · Filter by author NJNataren opened on Mar 18, 2024

• bam_stat_make_input.sh bug - missing command mkdir ${outdir}

  Sydney-Informatics-Hub/RNASeq-DE#4 · Filter by author NJNataren opened on Mar 18, 2024

• fastqc_run_parallel.pbs returns sed error

  bug
  Sydney-Informatics-Hub/RNASeq-DE#3 · Filter by author NJNataren opened on Feb 28, 2024
  4

• trimmed fastqc make input bugs

  Sydney-Informatics-Hub/RNASeq-DE#2 · Filter by author georgiesamaha opened on Jun 9, 2023

• inflexible bbduk trim make input script

  Sydney-Informatics-Hub/RNASeq-DE#1 · Filter by author georgiesamaha opened on Jun 9, 2023