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fix(epac): close extraction provenance and sealing P1s - #3

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erinepshovel-code merged 33 commits into
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repair/postmerge-extraction-review
Sep 10, 2026
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erinepshovel-code merged 33 commits into
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repair/postmerge-extraction-review

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Post-merge review of extraction PR #1 exposed source-owned P1 truth/sealing defects. This repair is intentionally not a graduation claim.

Repairs in this head:

  • replace the self-adopting UCNS carrier digest with EPAC-owned immutable values and stamp the actual extraction dependency ucns@828c0b8... into construction identity;
  • validate the complete derived structure against the declared couplings before sealing, rather than checking only parts/arity/charge state;
  • update live subatomic receipts to the UCNS revision actually used and freeze nested returned state/source identity so closed candidates cannot drift after hashing;
  • align README standing with docs/graduation.json: physical extraction is complete, exact candidate/forge verification is still hmmm.

Preserved: the extracted research, existing falsified molecular-shape result, and candidate physics standing.

Not ready to merge until current-head CI and Codex settle. Known review items outside this patch remain blockers if still reproduced: duplicate dimensional coupling declarations, heterogeneous quaternion sort, and any canonical skill-lib defects currently present only through the vendored snapshot. Upstream skill defects must be repaired at skill-lib and refreshed rather than shadow-patched here.

hmmm: exact candidate/forge verification; clean packaging/license/release/reconsumption; remaining post-extraction P2 audit findings.

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Maintenance pass update on current repair branch:

  • Fixed the CI-blocking quaternion_structure_readout() generator syntax at 1befb60b29a4dc69d8b89ea7fa077a85f4f98810.
  • The next CI run now reaches all 41 repository tests instead of failing import, but remains red with 12 errors at _validate_structure_matches_couplings().
  • The remaining failure is structural, not an environment issue: _expected_structure_from_couplings() reconstructs ambient dimension order from first coupling occurrence, while the original structure can carry a different ambient order (for example nuclear spaces declare all proton ids then neutron ids). Raw _tuple_tree(structure) == _tuple_tree(expected_structure) therefore rejects semantically identical order-invariant degree/quaternion structure.

Do not weaken the derived-field sealing P1. Smallest repair: canonicalize the order-insensitive derived structure (especially degree/quaternion collections) before exact comparison, or emit those collections canonically at construction time; keep the existing negative mutation tests proving fabricated degree/count/representation/quaternion fields fail closed.

PR remains not mergeable by policy while CI is red and current-head Codex review is unsettled.

hmmm: exact candidate/forge verification, packaging/license/release/reconsumption remain separate graduation gates.

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@codex review

Please review the current head after the maintenance syntax repair. CI is still red on the derived-structure equality boundary; treat that as a blocker, not a green-path assumption.

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@codex address that feedback

Preserve the sealing concept while fixing the two review defects on the current branch: derived-structure comparison must remain complete but order-invariant where the structure contract is order-invariant, and receipts must not assert an exact observed UCNS commit unless runtime evidence verifies it. Keep unresolved observed dependency identity as hmmm rather than weakening provenance. Run the repository regression suite before considering the repair complete.

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@codex address that feedback

Repair only the two live exact-head P2s on 45397a2: bind any sealed UCNS commit identity to the actually loaded implementation bytes rather than only checkout HEAD, preserving hmmm when that cannot be proven; and amortize that verification across nested/top-level construction without stale-cache false provenance. Add focused regressions, retain all existing sealing/provenance constraints, rerun the full EPAC gate, and request exact-head review. Do not merge.

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Exact-head repair update (e270a372a2c4c2de109373ecbef5a6a5fc8f7714): UCNS provenance is now bound to the executing function code and clean pinned source, with a witness-keyed shared cache that invalidates on HEAD, index, source, mode, or loaded-code changes. Local verification: 52 repository tests and 30 subatomic witnesses passed; falsification and work-graph invariants passed. @codex review

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Exact-head repair candidate: e6ac76e5463e4266cee0a1d429a16a6cffccde91. Git mode now follows the owner-executable bit; retained structures are type-checked before traversal; the stale count is corrected; and local provenance Git calls no longer have an unjustified fixed timeout. Local verification: all 52 tests independent of the cleaned-away local UCNS Git metadata pass; the two exact-pin tests remain locally hmmm for that explicit environment reason; compileall passes. Please perform a full exact-head P1/P2 blocker review, using CI for the fresh pinned checkout. Do not merge.

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Please complete the exact-head review for e6ac76e5463e4266cee0a1d429a16a6cffccde91. EPAC CI run 34410601745 passes and every prior inline thread is resolved. Review for remaining P1/P2 merge blockers; do not merge.

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Please review exact head 7a5371d5786552560611db8b4b40d01b61a05fff. Retained carrier coordinates are now checked against frozen geometry even when digests are recalculated, and every accepted participant tree is rebuilt into deeply immutable canonical envelopes before construction/replay retention. The new construction/replay contradiction and post-seal mutation vectors pass; all 52 locally runnable repository tests and compileall pass. Use exact-head CI for the fresh pinned UCNS checkout. Review remaining P1/P2 blockers; do not merge.

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Please review exact head a799e47bdedf7becff16a646649176afbe1223b1. Retained trees are now checked against the complete public-constructor normal form: constructor-valid scalars/options, canonical sorted coupling records plus derived structure, and the exact fixed geometry schema with UCNS commit restricted to the pin or hmmm. Mutually consistent forgery vectors exercise construction and replay. Local evidence: 55/57 repository tests and 29/30 subatomic witnesses pass; the three excluded exact-pin checks require the cleaned-away UCNS Git metadata and are delegated to this head's fresh-checkout CI. Preserved molecular standing remains FALSIFIED. Review remaining P1/P2 blockers; do not merge.

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Please review exact head 07595bafbf7ac7d3b1bc692658512cca79f04c64. Retained geometry schema equality is now type-sensitive canonical-byte equality, and the supplied digest must also equal the canonicalized geometry returned for retention. The True-for-1 forgery vector, the complete fixed-field matrix, construction/replay boundaries, stale-code hmmm replay, compileall, and the executable CHECK pass locally. Exact fresh-checkout CI covers the three Git-metadata-dependent pin checks. Review remaining P1/P2 blockers; do not merge.

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Please review exact head ce8ed85a8d75e96576a7d0e480c806b9d4a7f85a. This head closes all seven P2 findings: canonical-byte comparisons reject retained carrier, outer geometry, derived-structure, and charge-state boolean/integer aliases; UCNS provenance hashes and validates the full staged index against pinned HEAD; effective referenced builtins are fingerprinted by identity; and all provenance CHECKS targets are module-level no-argument callables. Local repair witnesses and three executable CHECK targets pass. The broader scratch run is 58/60 repository tests and 29/30 subatomic witnesses, with only the known cleaned-away UCNS Git metadata preventing exact-pin assertions locally; fresh-checkout CI is authoritative for those.

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@codex review

Please review exact head e535c507194402b742f49207264efed30454c1f8. This head closes all four findings from the preceding exact-head review:

  • malformed retained ucns_commit values are type-checked before set membership and fail closed as PublicGonolConstructionError;
  • the duplicate current-gate inventory reports the discovered 60 repository tests;
  • the cache witness hashes the effective GIT_INDEX_FILE, including Git's root-relative path semantics; and
  • CHECK metadata declares the temporary UCNS module-global and verification-cache mutation surfaces with their cleanup.

All five repaired remote files exactly match the locally tested bytes. Focused malformed-commit and alternate-index tests pass; repository discovery is 58/60 locally, with only the two known exact-pin assertions unavailable because this scratch checkout's UCNS .git pointer targets cleaned metadata. Fresh authoritative EPAC CI is running against intact checkout metadata.

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Codex Review: Didn't find any major issues. Nice work!

Reviewed commit: e535c50719

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erinepshovel-code merged commit e604b0c into main Sep 10, 2026
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