canon: rotate METAPAT to primitive structure/action v3

.github/workflows/ci.yml

@@ -81,7 +81,7 @@ jobs:
       - name: Verify every canon-bearing file byte identity
         run: python -c "from pathlib import Path; import metapat; metapat.assert_canon_files_match(Path('.'))"
       - name: Verify packaged root-spine fixture
-        run: python -c "from importlib.resources import files; import metapat; assert files('metapat').joinpath('fixtures/root-spine-envelope-v2.json').read_text(encoding='utf-8').strip() == metapat.root_spine_module_envelope().to_json()"
+        run: python -c "from importlib.resources import files; import metapat; assert files('metapat').joinpath('fixtures/root-spine-envelope-v3.json').read_text(encoding='utf-8').strip() == metapat.root_spine_module_envelope().to_json()"
 
   exact-ucns-integration:
     name: Exact post-reset UCNS profile / pinned producer
@@ -174,10 +174,10 @@ jobs:
           import metapat
           assert version("metapat") == metapat.__version__ == "0.7.0"
           assert files("metapat").joinpath("py.typed").is_file()
-          root_fixture = files("metapat").joinpath("fixtures/root-spine-envelope-v2.json")
-          catalog_fixture = files("metapat").joinpath("fixtures/semantic-module-catalog-v2.json")
-          application_fixture = files("metapat").joinpath("fixtures/quantum-magnetism-application-v2.json")
-          pipe_fixture = files("metapat").joinpath("fixtures/three-phase-electromagnetic-pipe-v2.json")
+          root_fixture = files("metapat").joinpath("fixtures/root-spine-envelope-v3.json")
+          catalog_fixture = files("metapat").joinpath("fixtures/semantic-module-catalog-v3.json")
+          application_fixture = files("metapat").joinpath("fixtures/quantum-magnetism-application-v3.json")
+          pipe_fixture = files("metapat").joinpath("fixtures/three-phase-electromagnetic-pipe-v3.json")
           envelope = metapat.root_spine_module_envelope()
           catalog = metapat.canonical_semantic_catalog()
           application = metapat.quantum_magnetism_application_module(catalog)

.github/workflows/v3-final-repair-once.yml

@@ -0,0 +1,55 @@
+name: Final v3 repair once
+on:
+  push:
+    branches: [research/platonic-energy-operators]
+permissions:
+  contents: write
+jobs:
+  repair:
+    if: github.actor != 'github-actions[bot]'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v7.0.1
+        with:
+          ref: research/platonic-energy-operators
+      - uses: actions/setup-python@v7.0.0
+        with:
+          python-version: '3.12'
+      - run: python -m pip install -e .[dev]
+      - name: Repair affixiation role and regenerate
+        shell: python
+        run: |
+          from pathlib import Path
+          p = Path('src/metapat/affixiation_harmonics.py')
+          s = p.read_text()
+          old = '''    (
+        "metapat.theory.8.emergence",
+        "integration",
+        "Affixiation may integrate a declared relation as a higher-scale object-whole while retaining the addressable identities of its participants.",
+    ),'''
+          new = '''    (
+        "metapat.theory.8.emergence",
+        "emergence",
+        "Affixiation may integrate a declared relation as a higher-scale object-whole while retaining the addressable identities of its participants.",
+    ),'''
+          if old not in s:
+              raise SystemExit('expected affixiation integration role not found')
+          p.write_text(s.replace(old, new))
+          for temporary in (Path('.v3-pytest.log'), Path('.v3-pytest.status')):
+              if temporary.exists(): temporary.unlink()
+      - name: Regenerate metadata and verify
+        shell: bash
+        run: |
+          python tools/generate_msdmd.py
+          python -m pytest -q
+          python tools/check_contract_graph.py
+          python tools/generate_catalog.py --check
+          python tools/generate_application_fixtures.py --check
+          rm -f .github/workflows/v3-final-repair-once.yml
+      - name: Commit verified repair
+        run: |
+          git config user.name github-actions[bot]
+          git config user.email 41898282+github-actions[bot]@users.noreply.github.com
+          git add -A
+          git commit -m 'fix: close final metapat v3 source drift'
+          git push origin HEAD:research/platonic-energy-operators

.v3-pytest.log

@@ -0,0 +1,28 @@
+.....F.................................................................. [ 74%]
+.........................                                                [100%]
+=================================== FAILURES ===================================
+______________________ test_application_source_is_current ______________________
+
+    def test_application_source_is_current() -> None:
+        application = affixiation_harmonics_application_module()
+>       metapat.assert_application_sources_match(Path(__file__).resolve().parents[1], application)
+
+tests/test_affixiation_harmonics.py:102: 
+_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
+
+root = PosixPath('/home/runner/work/metapat/metapat')
+application = MetapatApplicationModule(application_id='metapat.application.affixiation_harmonics', application_version='affixiation-...module', schema_version='1.0.0', application_digest='77fdce04bb59fe34e510221fd051be289681016b40997a83a903d35998eb1e7a')
+
+    def assert_application_sources_match(
+        root: Path,
+        application: MetapatApplicationModule,
+    ) -> None:
+        mismatches = application_source_mismatches(root, application)
+        if mismatches:
+>           raise ValueError("application source mismatch: " + "; ".join(mismatches))
+E           ValueError: application source mismatch: source statement mismatch: docs/applications/affixiation-harmonics.md#catalog-bindings::statement-11
+
+src/metapat/application.py:499: ValueError
+=========================== short test summary info ============================
+FAILED tests/test_affixiation_harmonics.py::test_application_source_is_current - ValueError: application source mismatch: source statement mismatch: docs/applications/affixiation-harmonics.md#catalog-bindings::statement-11
+1 failed, 96 passed in 0.83s

.v3-pytest.status

@@ -0,0 +1 @@
+1