Conflict 060226 2049

.emergent/emergent.yml

@@ -1,4 +1,4 @@
 {
   "job_id": "1e229462-3e1a-459c-a7b7-c20886c651c9",
-  "created_at": "2026-02-06T23:45:02.849518+00:00Z"
+  "created_at": "2026-02-07T23:14:31.029020+00:00Z"
 }

.gitignore

@@ -6,3 +6,27 @@
 # Environment files
 *.env
 *.env.*
+-e 
+# Environment files
+*.env
+*.env.*
+-e 
+# Environment files
+*.env
+*.env.*
+-e 
+# Environment files
+*.env
+*.env.*
+-e 
+# Environment files
+*.env
+*.env.*
+-e 
+# Environment files
+*.env
+*.env.*
+-e 
+# Environment files
+*.env
+*.env.*

COMMANDS.md

@@ -0,0 +1,310 @@
+# Quick Reference - PCNA System Commands
+
+## ⚠️ Important Note
+You're running as **root** user, so **DO NOT use `sudo`** - it's not needed and will cause "command not found" errors.
+
+---
+
+## 🎮 Service Control
+
+### Check Status
+```bash
+supervisorctl status
+```
+
+### Restart Services
+```bash
+# Restart everything
+supervisorctl restart all
+
+# Restart individual services
+supervisorctl restart backend
+supervisorctl restart frontend
+supervisorctl restart mongodb
+```
+
+### Stop Services
+```bash
+supervisorctl stop all
+supervisorctl stop backend
+supervisorctl stop frontend
+```
+
+### Start Services
+```bash
+supervisorctl start all
+supervisorctl start backend
+supervisorctl start frontend
+```
+
+### Reload Configuration
+```bash
+supervisorctl reload
+# or
+supervisorctl reread && supervisorctl update
+```
+
+---
+
+## 📊 System Health Checks
+
+### Quick Status Check
+```bash
+/app/scripts/status.sh
+```
+
+### Manual Health Checks
+```bash
+# Backend health
+curl http://localhost:8001/api/health
+
+# System health
+curl http://localhost:8001/api/system-health
+
+# Active seeds
+curl http://localhost:8001/api/seeds
+
+# Topology
+curl http://localhost:8001/api/topology
+```
+
+### Test LLM Integration
+```bash
+curl -X POST http://localhost:8001/api/llm/chat \
+  -H "Content-Type: application/json" \
+  -d '{"prompt":"Hello","provider":"openai","model":"gpt-5.2"}'
+```
+
+### Run EDCM Analysis
+```bash
+curl http://localhost:8001/api/edcm/analyze
+```
+
+---
+
+## 📜 View Logs
+
+### Backend Logs
+```bash
+# Error logs
+tail -f /var/log/supervisor/backend.err.log
+
+# Last 50 lines
+tail -50 /var/log/supervisor/backend.err.log
+
+# Output logs
+tail -f /var/log/supervisor/backend.out.log
+```
+
+### Frontend Logs
+```bash
+# Output logs
+tail -f /var/log/supervisor/frontend.out.log
+
+# Last 50 lines
+tail -50 /var/log/supervisor/frontend.out.log
+```
+
+### MongoDB Logs
+```bash
+tail -f /var/log/mongodb/mongod.log
+```
+
+### All Supervisor Logs
+```bash
+tail -f /var/log/supervisor/supervisord.log
+```
+
+---
+
+## 🔧 Troubleshooting
+
+### Service Won't Start
+```bash
+# Check status
+supervisorctl status backend
+
+# View error logs
+tail -50 /var/log/supervisor/backend.err.log
+
+# Restart
+supervisorctl restart backend
+```
+
+### Backend Issues
+```bash
+# Check if dependencies are installed
+cd /app/backend
+pip list | grep -E "fastapi|emergent"
+
+# Reinstall dependencies
+/app/scripts/install_backend.sh
+
+# Restart
+supervisorctl restart backend
+```
+
+### Frontend Issues
+```bash
+# Check Node.js
+node --version
+yarn --version
+
+# Reinstall dependencies
+cd /app/frontend
+rm -rf node_modules
+yarn install
+
+# Restart
+supervisorctl restart frontend
+```
+
+### MongoDB Issues
+```bash
+# Check if running
+supervisorctl status mongodb
+
+# Check logs
+tail -50 /var/log/mongodb/mongod.log
+
+# Ensure data directory exists
+mkdir -p /data/db
+
+# Restart
+supervisorctl restart mongodb
+```
+
+### Complete System Reset
+```bash
+# Stop all
+supervisorctl stop all
+
+# Wait
+sleep 3
+
+# Start all
+supervisorctl start all
+
+# Check status
+supervisorctl status
+```
+
+---
+
+## 🚀 Quick Start Commands
+
+### Start Everything
+```bash
+supervisorctl restart all
+sleep 5
+/app/scripts/status.sh
+```
+
+### Check Everything
+```bash
+# System status
+/app/scripts/status.sh
+
+# Or use helper
+/app/scripts/commands.sh
+```
+
+---
+
+## 📍 Access URLs
+
+- **Dashboard**: http://localhost:3000
+- **Backend API**: http://localhost:8001
+- **API Docs**: http://localhost:8001/docs
+
+---
+
+## 📁 Important Paths
+
+### Code
+- Backend: `/app/backend/`
+- Frontend: `/app/frontend/`
+- Scripts: `/app/scripts/`
+
+### Logs
+- Backend: `/var/log/supervisor/backend.err.log`
+- Frontend: `/var/log/supervisor/frontend.out.log`
+- MongoDB: `/var/log/mongodb/mongod.log`
+
+### Configuration
+- Supervisor: `/etc/supervisor/conf.d/pcna.conf`
+- Backend env: `/app/backend/.env`
+- Frontend env: `/app/frontend/.env`
+
+---
+
+## ✅ Common Tasks
+
+### Update Backend Code
+```bash
+# Edit code in /app/backend/
+# Backend auto-reloads (no restart needed)
+```
+
+### Update Frontend Code
+```bash
+# Edit code in /app/frontend/src/
+# Frontend hot-reloads (no restart needed)
+```
+
+### Install New Python Package
+```bash
+cd /app/backend
+pip install package-name
+# Add to requirements.txt
+supervisorctl restart backend
+```
+
+### Install New Node Package
+```bash
+cd /app/frontend
+yarn add package-name
+# package.json auto-updates
+supervisorctl restart frontend
+```
+
+### View All Commands
+```bash
+/app/scripts/commands.sh
+```
+
+---
+
+## 💡 Pro Tips
+
+1. **No sudo needed** - You're root, commands work directly
+2. **Hot reload enabled** - Most code changes apply automatically
+3. **Check logs first** - When debugging, always check logs
+4. **Use helper scripts** - `/app/scripts/` has useful tools
+5. **Status check** - Run `/app/scripts/status.sh` anytime
+
+---
+
+## 🆘 Emergency Commands
+
+### Everything Broken?
+```bash
+supervisorctl restart all
+```
+
+### Still Not Working?
+```bash
+supervisorctl stop all
+sleep 5
+supervisorctl start all
+/app/scripts/status.sh
+```
+
+### Need Full Restart?
+```bash
+supervisorctl reload
+```
+
+---
+
+**Remember: No `sudo` needed - you're already root!** ✅