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Add audited From Photons to the Macroverse research package - #32

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Sep 9, 2026
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@erinepshovel-code erinepshovel-code commented Sep 6, 2026

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Summary

  • add research/from-photons-to-macroverse/ as stack-local pre-graduation research
  • preserve the source as hash-pinned external evidence and publish a full audited revision as ordered, hash-bound Markdown fragments
  • repair boundary-support, measurement-certificate, subject-family, triadic-sufficiency, chronology, and symbol-collision defects
  • add claim/domain/work-graph ledgers, a frozen synthetic preregistration, source receipts, assembler, tests, and path-scoped CI
  • freeze the preregistration's result-bearing streams, intervention allocation, nested transition, fitted control families, recovery/ECE estimators, hypothesis comparison sets, and resampling procedures before sealed runs
  • pin current UCNS and literature standing without transferring authority or validation
  • leave STACK_MANIFEST.md and stack-manifest.json unchanged because no owning canonical repository or release exists

Verification

  • python -m unittest discover -s research/from-photons-to-macroverse/tests -q — 13 tests passed
  • assembled Markdown SHA-256 cf8af499c3a0e9544eb22d0947b0e836123a60c75adcacbfb1e41a81112afd3b
  • the prior audited revision rendered to 58 pages and passed visual inspection; the current post-repair render remains hmmm until rerendered
  • original PDF rendered to 49 pages and visually inspected
  • exact-head GitHub Actions run 34193291192 — success

hmmm

  • references 21 and 22 lack immutable source identities
  • the synthetic protocol is not run
  • no empirical seven-carrier map exists
  • subject overlap and nesting remain unresolved
  • current audited-revision visual render remains stale after paper text repairs
  • repository-wide reuse licensing remains unresolved

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erinepshovel-code and others added 3 commits September 7, 2026 13:56
Preserve candidate standing, repair measurement and subject-selection contracts, pin provenance, add a frozen synthetic preregistration, and keep canonical, empirical, and clinical standing nontransferring.
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erinepshovel-code force-pushed the research/from-photons-to-macroverse branch from e9b1798 to f09673b Compare September 7, 2026 14:04
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Comment thread stack-manifest.json
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Complete the exact-head review for Stack PR #32 at a9fc35b. Review only that head against the stated merge gates and durable-provenance requirements. Do not modify code unless you find a concrete defect. Report either CLEAN / READY or specific blocking findings with file/line evidence. Do not merge.

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Complete the exact-head review for Stack PR #32 at 547a33f. Review only that head against the stated merge gates and durable-provenance requirements. Do not modify code unless you find a concrete defect. Report either CLEAN / READY or specific blocking findings with file/line evidence. Do not merge.

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Exact head 9bbca8561b26501d4c61ac4d568072b08a78b15c freezes the live preregistration blockers: canonical random streams, deterministic rejection and episode allocation, explicit intervention operators, the nested transition equation, fitted family equations/masks/variance heads, per-hypothesis controls, the embedded recovery/ECE certificate, and exact bootstrap/permutation procedures. Please review this exact head. Do not merge.

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Please perform an exact-head blocker review of commit d9ad5f0. Focus on P1/blocking reproducibility defects in the sealed preregistration. The previously reported P2 manifest-byte validation gap is deliberately left unchanged as nonblocking. Preserve the package's hmmm boundaries and pre-graduation status. Do not merge.

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Please perform an exact-head blocker review of commit 68bab5f. Focus only on P1/live blockers to deterministic preregistration replay and frozen decision status. Historical findings are superseded; the manifest-byte P2 remains deliberately out of blocker scope. Preserve the package's hmmm boundaries, durable provenance, and pre-graduation research status. Do not merge.

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Please perform an exact-head blocker review of commit 748ce02. Focus only on P1/live blockers to deterministic sealed replay and frozen decision status. Historical findings are superseded; the manifest-byte P2 remains deliberately nonblocking and unchanged. Preserve hmmm, provenance, and pre-graduation research boundaries. Do not merge.

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Please perform an exact-head blocker review of commit 010459d. Focus only on P1/live blockers to deterministic sealed replay and frozen decision status. Historical findings are superseded; the manifest-byte P2 remains deliberately nonblocking and unchanged. Preserve hmmm, provenance, and pre-graduation research boundaries. Do not merge.

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Codex Review: Didn't find any major issues. 👍

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Please perform a full exact-head review of commit 97f90cd for unresolved P1/P2 findings. The manifest-byte P2 was repaired by validating declared fragment lengths during assembly. Preserve hmmm, provenance, and pre-graduation research boundaries. Do not merge.

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Exact-head repair update (49a7729feaaaa9629804934fcedd7463c0828663): the preregistration now binds byte-level replay to the hash-pinned executable; the latest edge-case findings are closed with value-producing Glorot/ρ initializers, complete stability-probe keys, strict open uniforms, direct unnested-family classification, and executable-path verification. Local verification: replay pin matched; 14 tests passed. @codex review

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Exact-head repairs are now at 052ce74ce88d0bb0c8dc58027bd312c4de3c4932 (tree b81efa7dec78cc27f8fd49ee7e9b77329d6fb601). Local replay verification, 14 contract tests, compileall, and diff checks pass. Please review this exact head for remaining merge blockers.\n\n@codex review

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Final repair candidate is exact head 8c8a73cd44e631b343c1a99bc8f9da5bbde9166a (tree 0f4882e8db020378e97c253dea828fc0ac781f26). Protocol 0.5.0 verification, generated-vector identity, 14 contract tests, compileall, and diff checks pass. Please review this exact head for any remaining merge blocker.\n\n@codex review

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Exact-head review requested for 3b929acd43c5c25c29f848f094bd90544a1cae37. This head fixes the family-specific model-partition population bound, refreshes the hash pin and vectors, and passes replay verification plus all 14 contract tests.

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Codex Review: Didn't find any major issues. Nice work!

Reviewed commit: 3b929acd43

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Please review exact head 3b929acd43c5c25c29f848f094bd90544a1cae37. Both head workflows pass, all inline threads are resolved, replay verification passes, and the family-specific scalar/leaf permutation population regression is pinned in executable vectors.

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Comment on lines +791 to +793
required superiority control and both outcomes in that hypothesis. For each cell compute its
bootstrap mean and sample standard error `se_b`; define
`Z_b=max_{c,outcome}|(mean_b(d)-mean(d))/se_b|`. A zero or nonfinite `se_b`

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P1 Badge Pin the standard-deviation recurrence before resampling

For sealed samples near a decision threshold, the serial-fold rule fixes means but does not define how sd(d), se_b, bootstrap sd_b, or permutation standard deviations are evaluated, and the pinned executable provides no standard-deviation primitive. Two replayers can therefore use a two-pass formula versus Welford's recurrence and obtain different binary64 Z_b, G_b, M_p, adjusted p-values, and terminal statuses; define and vector the exact recurrence and operation order before these quantities are decision-bearing.

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@erinepshovel-code
erinepshovel-code merged commit 16dfa8f into main Sep 9, 2026
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