TS was written to improve the quality of life for its creator, maybe it can help you as well?
It contains a collection of functions that may be relevant people analysing single-cell RNA-sequencing data, and analysing Ig(BCR)/TCR-sequences.
Please give our method article a look at the DOI button above. It shows the importance of removing BCR/TCR genes prior to performing unsupervised clustering and downstream analyses of scRNA-seq data containing lymphocytes.
You can find a reference webpage here, or under the About section in the top right corner of this webpage.
To install the latest version of the TS package:
devtools::install_github("TimothySundell/TS")My plan is to keep this repository updated as much as possible. If something is not working, please post in the Issues section.
As of now, the package does not pass R CMD CHECK as the tidyverse way of coding leaves me a lot of unlinked global variables to reference. Will maybe be fixed in the future.
- Functions for plotting figures
- Functions for analysing sc-V(D)J-sequencing data
- Functions for analysing scRNA-seq data
- General data-wrangling
