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PathwayObject

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Ewoud Ewing edited this page Oct 29, 2020 · 1 revision

The Pathway Object is the main S4 object used in the package. It is created by either LoadGeneSets or by ObjectCreator.

The content of the object are the following:

PathwayObject

Example Script: Example

Step 1A: Loading the data

Step 1B: Creating an Object

Step 2: Combine and Cluster

Step 2B: User supplied distance function

Step 2C: Highlighting-Genes

Step 3: Exporting Data

Step 4: Functional Investigation

Video: Step-by-step user guide

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