AlphaBIO 2.1.3 - DNA/RNA Manipulation Suite

AlphaBIO 2.1.3 is a powerful DNA/RNA manipulation tool developed by WolfTech Innovations. It provides a terminal-based interface (TUI) for a range of bioinformatics tasks, from basic sequence transcription and mutation to advanced sequence analysis and random sequence generation. With easy-to-use functions for both DNA and RNA sequences, AlphaBIO offers various tools for sequence analysis, mutation introduction, GC content calculation, and more.

Features:

• DNA/RNA Transcription: Transcribe DNA sequences to RNA and vice versa.
• Mutation Introduction: Perform point mutations, insertions, and deletions on sequences with customizable probabilities.
• GC Content Calculation: Analyze the GC content percentage of a given sequence.
• Sequence Alignment: Compare two sequences and highlight matching and mismatching base pairs.
• Reverse Complement: Generate reverse complement sequences for DNA and RNA.
• Random Sequence Generation: Create random DNA or RNA sequences with customizable GC content and length.
• Base Counting: Count the occurrence of each base (A, T/U, C, G) in a sequence.
• TUI Interface: Interact with the program through a terminal-based user interface for ease of use.

Installation:

1. Clone this repository:

   git clone https://github.com/WolfTech-Innovations/AlphaBIO.git

2. Navigate to the project folder:

   cd AlphaBIO

3. Install dependencies (if any):

   pip install -r requirements.txt

Usage:

To run the program:

python AlphaBIO.py

You will be presented with an interactive menu where you can choose your sequence type (DNA or RNA) and perform various operations like mutation, transcription, reverse complement, and more.

Creating DNA that binds to and disables the target DNA:

1. Select your sequence type (DNA or RNA).
2. Enter your sequence.
3. Choose operation 9.
4. Check output.txt

Contributions:

If you'd like to contribute to this project, please fork this repository, make changes, and submit a pull request!

License:

This project is licensed under the GPL License.

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