Create marine_environment3.yaml

.github/workflows/main.yml

@@ -18,7 +18,7 @@ jobs:
 
       - name: Install Mamba
         run: |
-          conda install -c conda-forge mamba=1.5.12 -y 
+          conda install -c conda-forge mamba=1.5.12 python=3.10 -y 
 
       - name: Print conda folder contents
         run: |

marine_environment3.yaml

@@ -0,0 +1,281 @@
+name: marine_environment
+channels:
+  - anaconda
+  - bioconda
+  - r
+  - defaults
+  - conda-forge
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - abseil-cpp=20211102.0
+  - anndata=0.9.2
+  - anyio=3.5.0
+  - argon2-cffi=21.3.0
+  - argon2-cffi-bindings=21.2.0
+  - arpack=3.8.0
+  - arrow-cpp=11.0.0
+  - asttokens=2.0.5
+  - async-lru=2.0.4
+  - attrs=23.1.0
+  - aws-c-common=0.6.8
+  - aws-c-event-stream=0.1.6
+  - aws-checksums=0.1.11
+  - aws-sdk-cpp=1.8.185
+  - babel=2.11.0
+  - backcall=0.2.0
+  - backports=1.0
+  - backports.zoneinfo=0.2.1
+  - beautifulsoup4=4.12.2
+  - bedtools=2.31.1
+  - blas=1.0=mkl
+  - bleach=4.1.0
+  - boost-cpp=1.84.0
+  - bottleneck=1.3.5
+  - brotli=1.0.9
+  - brotli-python=1.0.9
+  - bzip2=1.0.8
+  - c-ares=1.21.0
+  - ca-certificates=2024.2.2
+  - cached-property=1.5.2
+  - cached_property=1.5.2
+  - certifi=2024.2.2
+  - cffi=1.15.1
+  - charset-normalizer=2.0.4
+  - colorama=0.4.6
+  - comm=0.1.2
+  - contourpy=1.0.5
+  - cryptography=41.0.3
+  - cycler=0.11.0
+  - cyrus-sasl=2.1.28
+  - dbus=1.13.18
+  - debugpy=1.6.7
+  - decorator=5.1.1
+  - defusedxml=0.7.1
+  - executing=0.8.3
+  - expat=2.5.0
+  - fontconfig=2.14.2
+  - fonttools=4.25.0
+  - freetype=2.12.1
+  - get-annotations=0.1.2
+  - gflags=2.2.2
+  - giflib=5.2.1
+  - glib=2.69.1
+  - glog=0.5.0
+  - glpk=5.0
+  - gmp=6.3.0
+  - grpc-cpp=1.48.2
+  - gst-plugins-base=1.14.1
+  - gstreamer=1.14.1
+  - h5py=3.8.0
+  - hdf5=1.12.2
+  - icu=73.2
+  - idna=3.4
+  - igraph=0.10.8
+  - importlib-metadata=6.0.0
+  - importlib_metadata=6.0.0
+  - importlib_resources=6.1.1
+  - intel-openmp=2023.1.0
+  - ipykernel=6.26.0
+  - ipython=8.12.2
+  - ipywidgets=8.0.4
+  - jedi=0.18.1
+  - jinja2=3.1.2
+  - joblib=1.3.2
+  - jpeg=9e
+  - json5=0.9.6
+  - jsonschema=4.19.2
+  - jsonschema-specifications=2023.7.1
+  - jupyter=1.0.0
+  - jupyter-lsp=2.2.0
+  - jupyter_client=8.1.0
+  - jupyter_console=6.6.3
+  - jupyter_core=5.3.0
+  - jupyter_events=0.8.0
+  - jupyter_server=2.10.0
+  - jupyter_server_terminals=0.4.4
+  - jupyterlab=4.0.8
+  - jupyterlab_pygments=0.1.2
+  - jupyterlab_server=2.25.1
+  - jupyterlab_widgets=3.0.9
+  - kiwisolver=1.4.4
+  - krb5=1.20.1
+  - lcms2=2.12
+  - ld_impl_linux-64=2.40
+  - leidenalg=0.10.2
+  - libaec=1.1.2
+  - libblas=3.9.0
+  - libboost=1.84.0
+  - libboost-devel=1.84.0
+  - libboost-headers=1.84.0
+  - libbrotlicommon=1.0.9
+  - libbrotlidec=1.0.9
+  - libbrotlienc=1.0.9
+  - libclang=14.0.6
+  - libclang13=14.0.6
+  - libcups=2.4.2
+  - libcurl=8.4.0
+  - libdeflate=1.18
+  - libedit=3.1.20221030
+  - libev=4.33
+  - libevent=2.1.10
+  - libffi=3.4.2
+  - libgcc-ng=13.2.0
+  - libgfortran-ng=11.2.0
+  - libgfortran5=11.2.0
+  - libgomp=13.2.0
+  - libiconv=1.17
+  - liblapack=3.9.0
+  - libleidenalg=0.11.1
+  - libllvm14=14.0.6
+  - libnghttp2=1.57.0
+  - libnsl=2.0.1
+  - libpng=1.6.39
+  - libpq=12.15
+  - libprotobuf=3.20.3
+  - libsodium=1.0.18
+  - libsqlite=3.44.0
+  - libssh2=1.11.0
+  - libstdcxx-ng=13.2.0
+  - libthrift=0.15.0
+  - libtiff=4.2.0
+  - libuuid=2.38.1
+  - libwebp=1.3.2
+  - libwebp-base=1.3.2
+  - libxcb=1.15
+  - libxkbcommon=1.6.0
+  - libxml2=2.12.4
+  - libzlib=1.2.13
+  - llvmlite=0.41.1
+  - lz4-c=1.9.4
+  - markupsafe=2.1.3
+  - matplotlib=3.7.2
+  - matplotlib-base=3.7.2
+  - matplotlib-inline=0.1.6
+  - mistune=2.0.4
+  - mkl=2023.1.0
+  - mkl-service=2.4.0
+  - mkl_fft=1.3.8
+  - mkl_random=1.2.4
+  - munkres=1.1.4
+  - mysql=5.7.24
+  - natsort=8.4.0
+  - nbclient=0.8.0
+  - nbconvert=7.10.0
+  - nbformat=5.9.2
+  - ncurses=6.4
+  - nest-asyncio=1.5.6
+  - networkx=3.1
+  - notebook=7.0.6
+  - notebook-shim=0.2.3
+  - numba=0.58.1
+  - numexpr=2.8.4
+  - numpy=1.24.3
+  - numpy-base=1.24.3
+  - openjpeg=2.4.0
+  - openssl=3.2.1
+  - orc=1.7.4
+  - overrides=7.4.0
+  - packaging=23.1
+  - pandas=2.0.3
+  - pandocfilters=1.5.0
+  - parso=0.8.3
+  - patsy=0.5.6
+  - pcre=8.45
+  - pexpect=4.8.0
+  - pickleshare=0.7.5
+  - pillow=10.0.1
+  - pip=23.3.1
+  - pkgutil-resolve-name=1.3.10
+  - platformdirs=3.10.0
+  - ply=3.11
+  - polars=0.19.12
+  - pooch=1.7.0
+  - prometheus_client=0.14.1
+  - prompt-toolkit=3.0.36
+  - prompt_toolkit=3.0.36
+  - psutil=5.9.0
+  - ptyprocess=0.7.0
+  - pure_eval=0.2.2
+  - pyarrow=11.0.0
+  - pybedtools=0.9.1
+  - pycparser=2.21
+  - pygments=2.15.1
+  - pynndescent=0.5.11
+  - pyopenssl=23.2.0
+  - pyparsing=3.0.9
+  - pyqt=5.15.10
+  - pyqt5-sip=12.13.0
+  - pysam=0.22.0
+  - pysocks=1.7.1
+  - python=3.8.18
+  - python-dateutil=2.8.2
+  - python-fastjsonschema=2.16.2
+  - python-igraph=0.11.3
+  - python-json-logger=2.0.7
+  - python-tzdata=2023.3
+  - python_abi=3.8
+  - pytz
+  - pyyaml=6.0.1
+  - pyzmq=25.1.0
+  - qt-main=5.15.2
+  - qtconsole=5.5.0
+  - qtpy=2.4.1
+  - re2=2022.04.01
+  - readline=8.2
+  - referencing=0.30.2
+  - requests=2.31.0
+  - rfc3339-validator=0.1.4
+  - rfc3986-validator=0.1.1
+  - rpds-py=0.10.6
+  - samtools
+  - scanpy=1.9.6
+  - scikit-learn=1.3.2
+  - scipy=1.10.1
+  - seaborn=0.13.1
+  - seaborn-base=0.13.1
+  - send2trash=1.8.2
+  - session-info=1.0.0
+  - setuptools=68.2.2
+  - sip=6.7.12
+  - six=1.16.0
+  - snappy=1.1.9
+  - sniffio=1.2.0
+  - soupsieve=2.5
+  - sqlite=3.41.2
+  - stack_data=0.2.0
+  - statsmodels=0.14.1
+  - stdlib-list=0.10.0
+  - tbb=2021.8.0
+  - terminado=0.17.1
+  - texttable=1.7.0
+  - threadpoolctl=3.2.0
+  - tinycss2=1.2.1
+  - tk=8.6.13
+  - tomli=2.0.1
+  - tornado=6.3.3
+  - tqdm=4.66.1
+  - traitlets=5.7.1
+  - typing-extensions=4.7.1
+  - typing_extensions=4.7.1
+  - tzdata=2023c
+  - umap-learn=0.5.5
+  - urllib3=1.26.18
+  - utf8proc=2.6.1
+  - wcwidth=0.2.5
+  - webencodings=0.5.1
+  - websocket-client=0.58.0
+  - wheel=0.41.3
+  - widgetsnbextension=4.0.5
+  - xkeyboard-config=2.40
+  - xorg-kbproto=1.0.7
+  - xorg-libx11=1.8.7
+  - xorg-libxau=1.0.11
+  - xorg-xextproto=7.3.0
+  - xorg-xproto=7.0.31
+  - xz=5.2.6
+  - yaml=0.2.5
+  - zeromq=4.3.4
+  - zipp=3.11.0
+  - zlib=1.2.13
+  - zstd=1.5.5