Optimizing a subset of antigens individually#85

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davipatti wants to merge 36 commits into

optimize-subset-individually

Commits on Feb 18, 2022

Function for optimizing a subset of antigens individually.
davipatti
committed

Commits on Feb 22, 2022

optimizeSubsetAgsIndividually now returns all individual maps as well as the merged map. Also applies the plotspec.
davipatti
committed

Commits on Mar 9, 2022

Merge branch 'master' into optimize-subset-individually
davipatti
committed
Disconnected maps now return an error rather than a warning
shwilks
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`agStressPerTiter()` and `srStressPerTiter()` now return a matrix with columns corresponding to stress per titer when nd values are excluded and when they are included
shwilks
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Corrected error when coloring maps by stress or showing error lines with disconnected points
shwilks
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If a titer table has column or row names but not sera or antigen names provided, names will be taken from the row and column names when creating a map.
shwilks
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Add support for reading maps with brotli compression
shwilks
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`agSequences()` and `srSequences()` now works when the stored sequences have different lengths or are missing for some points
shwilks
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Update antigen names
shwilks
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Correct incorrect usage of exclude_nd
shwilks
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Correct error where maps with duplicate antigen or serum names would not optimize
shwilks
committed
Merge pull request #99 from shwilks/master
shwilks
authored

Commits on Mar 13, 2022

Commits on Mar 14, 2022

Commits on Apr 8, 2022