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Release builds for Windows and Linux (zip + AppImage) via GitHub Actions - #2

Merged

adrobi merged 25 commits into

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release

Oct 31, 2026

Merged

Release builds for Windows and Linux (zip + AppImage) via GitHub Actions#2
adrobi merged 25 commits into
masterfrom
release

Commits on Oct 31, 2026
- Add the Release design spec (Windows zip and Linux AppImage via GitHub Actions)
  
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- Add the Release implementation plan (8 tasks)
  
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- Add a Linux build recipe for PhyML and PhyML-MPI
  
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- Make the app portable to Linux: tool names, data dir, mpirun, open folder, theme
  
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- Make the test suite pass on Linux and document Linux use
  
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- Describe third-party tools per platform and add build steps
  
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- Package the Windows zip with PyInstaller and smoke-test it
  
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- Build and smoke-test the Linux AppImage
  
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- Add the RAxML-NG Windows vs Linux parity check
  
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- Add the release workflow: tools, packages, smoke tests, draft release
  
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- Fix the release review findings: serial PhyML on Linux, pytest-free release scripts, child env, MS-MPI
  
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- Temporarily run the release workflow on pushes to the release branch
  
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- Make the fake tool write bytes so Cyrillic paths survive a cp1252 pipe
  
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- TEMPORARY: find which test file crashes Python 3.11 on Linux at exit
  
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- TEMPORARY: narrow down the Python 3.11 exit crash on Linux
  
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- TEMPORARY: per-file and per-test runs for the Python 3.11 exit crash
  
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- TEMPORARY: measure psutil True/False refcounts on Python 3.11
  
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- TEMPORARY: measure psutil wait refcounts on Python 3.11
  
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- TEMPORARY: fix the refcount probe indentation
  
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- TEMPORARY: per-test True/False refcount probe on Python 3.11
  
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- Remove the temporary Python 3.11 crash diagnostics
  
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- Test Linux on Python 3.12 and 3.13; document Python 3.12+ for Linux source runs
  
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- Mark suffixed versions as pre-releases; drop the temporary branch trigger
  
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- README in the style of the other projects, CHANGELOG and bilingual release notes
  
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- Build Linux PhyML for x86-64-v2 instead of -march=native
  
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Commits

Commits on Oct 31, 2026