Remove hardcoded local paths and internal session artifacts

.claude/agents/planner-migration-auditor.md

@@ -5,20 +5,20 @@ tools: Read, Grep, Glob, Bash
 model: inherit
 ---
 
-You are the **planner-migration auditor** for AEDIN. The crop planner is **NOT dead code** — it is being **migrated to the separate PolyCrop repo** (`/home/beef/projects/polycrop/`). aedin is academic + bot-facing; PolyCrop owns the consumer planner. Your job is to report the migration's true state across BOTH repos, dependency-aware, so the team neither removes something still depended on nor assumes something migrated that isn't. Read-only — never delete or edit.
+You are the **planner-migration auditor** for AEDIN. The crop planner is **NOT dead code** — it is being **migrated to the separate PolyCrop repo** (checked out alongside this one). aedin is academic + bot-facing; PolyCrop owns the consumer planner. Your job is to report the migration's true state across BOTH repos, dependency-aware, so the team neither removes something still depended on nor assumes something migrated that isn't. Read-only — never delete or edit.
 
 ## Context (verify, don't trust — this drifts)
 As of 2026-06-25: aedin's `/api/planner/*` endpoints were ALREADY removed (`grep /api/planner backend/server.js` = 0; server.js comment "PolyCrop owns the planner now"), BUT PolyCrop had **no backend** and its `src/CropPlanner.tsx` still fetched aedin's `/api/planner/*` via `API_BASE` (default `http://localhost:3001`) — i.e. the planner was BROKEN mid-migration. Re-verify; do not rely on this paragraph.
 
 ## What to check — BOTH repos
 
-### aedin (source: /home/beef/projects/aedin)
+### aedin (source: this repository)
 1. `grep -nE "/api/planner" backend/server.js` — endpoints present or removed?
 2. Residual artifacts: `migrations/002_planner_schema.js`; tables `tritrophic_chains` / `beneficial_chains` (drop candidates IF empty) / `companion_scores` (KEEP — derived academic data product, not consumer-served). Query row counts read-only via `backend/lib/db-paths.cjs` CORPUS_DB (or the aedin-corpus MCP).
 3. Any remaining `*planner*` scripts.
 
-### PolyCrop (destination: /home/beef/projects/polycrop)
-4. **Does PolyCrop have a backend at all?** (`ls polycrop/backend`; grep `src` for `express`/`app.listen`/`createServer` — IGNORE `dist/` build bundles, they're compiled frontend). No backend ⇒ it cannot serve the `/api/planner/*` its own frontend calls.
+### PolyCrop (destination: the PolyCrop checkout)
+4. **Does PolyCrop have a backend at all?** (`ls <polycrop>/backend`; grep `src` for `express`/`app.listen`/`createServer` — IGNORE `dist/` build bundles, they're compiled frontend). No backend ⇒ it cannot serve the `/api/planner/*` its own frontend calls.
 5. **Does PolyCrop's frontend still call aedin's planner over HTTP?** grep `src` for `/api/planner` + `API_BASE`/`VITE_API_URL`. If yes AND aedin removed them AND PolyCrop has no backend ⇒ the planner is BROKEN.
 6. What planner assets already live in PolyCrop (`CropPlanner.tsx`, `polyculture_planner_schema*.sql`).
 

.gitignore

@@ -90,7 +90,7 @@ backend/globi-interactions.tsv.gz
 .wrangler/
 
 # Re-ingest campaign workspace (regenerated by multi-critic-batch-prepare.js;
-# verdicts produced by subscription-mode agents per GUAM-REINGEST-RESUME.md)
+# verdicts produced by subscription-mode agents)
 backend/critic-batches/
 backend/critic-verdicts/
 backend/critic-batches-recovery/

backend/prompts/role-agent-interactive.md

@@ -4,7 +4,7 @@ You are an ecological role-assignment agent for the AgroEco Explorer database. Y
 
 ## Context
 
-**Database location:** `/home/beef/AgroEco/backend/globi.sqlite`
+**Database location:** `backend/globi.sqlite`
 
 **Key tables:**
 - `entities` — organisms with `primary_role`, `bio_category`, `family`, `genus`

backend/scripts/backup-globi-to-nas.sh

@@ -12,12 +12,12 @@
 #
 # Schedule via cron:
 #   crontab -e
-#   0 3 * * * /home/beef/projects/agroeco/backend/scripts/backup-globi-to-nas.sh >> /home/beef/.local/share/agroeco-backup.log 2>&1
+#   0 3 * * * /path/to/aedin/backend/scripts/backup-globi-to-nas.sh >> "$HOME"/.local/share/aedin-backup.log 2>&1
 
 set -euo pipefail
 
 # ─── Defaults (override in ~/.agroeco-backup.conf) ───────────────────────
-SOURCE_DB="/home/beef/projects/agroeco/backend/globi.sqlite"
+SOURCE_DB="$(cd "$(dirname "$0")/.." && pwd)/globi.sqlite"
 NAS_HOST="REPLACE_WITH_NAS_HOSTNAME_OR_IP"   # e.g. 192.168.1.100 or yournas.local
 NAS_USER="REPLACE_WITH_NAS_USERNAME"          # your Synology DSM user
 NAS_PATH="/volume1/backups/agroeco"           # path on the NAS

backend/scripts/fetch-uog-ceo-pdfs.cjs

@@ -4,7 +4,7 @@
  * publications via the publications-press.uog.edu Laravel API, then download
  * the ag/IPM-scope PDFs to literature/extension/ for the Pass-13+ ingest pipeline.
  *
- * API discovery notes (see GUAM-REINGEST-RESUME.md for the Pass-12 playbook):
+ * API discovery notes:
  *   - publications-press.uog.edu is a Nuxt SPA backed by a Laravel API. The
  *     SPA viewer URL (/ceo/technicalreport/<slug>/<id>) is JS-only, but the
  *     underlying API is plain JSON over POST.

backend/smoke-provenance-e2e.sh

@@ -3,7 +3,7 @@ set -euo pipefail
 cd "$(dirname "$0")"
 
 DB="${SMOKE_DB:-${TMPDIR:-/tmp}/globi-provenance-e2e.sqlite}"
-PROD_DB="${PROD_DB:-/home/beef/projects/agroeco/backend/globi.sqlite}"
+PROD_DB="${PROD_DB:-$(dirname "$0")/globi.sqlite}"
 
 if [ ! -f "$PROD_DB" ]; then
   echo "ERROR: production DB not found at $PROD_DB"

backend/smoke-substrate-e2e.sh

@@ -3,7 +3,7 @@ set -euo pipefail
 cd "$(dirname "$0")"
 
 DB="${SMOKE_DB:-/tmp/globi-substrate-e2e.sqlite}"
-PROD_DB=/home/beef/projects/agroeco/backend/globi.sqlite
+PROD_DB="${PROD_DB:-$(dirname "$0")/globi.sqlite}"
 
 if [ ! -f "$PROD_DB" ]; then
   echo "ERROR: production DB not found at $PROD_DB"

backend/smoke-variety-e2e.sh

@@ -3,7 +3,7 @@ set -euo pipefail
 cd "$(dirname "$0")"
 
 DB="${SMOKE_DB:-${TMPDIR:-/tmp}/globi-variety-e2e.sqlite}"
-PROD_DB="${PROD_DB:-/home/beef/projects/agroeco/backend/globi.sqlite}"
+PROD_DB="${PROD_DB:-$(dirname "$0")/globi.sqlite}"
 
 if [ ! -f "$PROD_DB" ]; then
   echo "ERROR: production DB not found at $PROD_DB"