gpi-neurotools

This repository contains wrappers for working with popular neuroimaging tools (e.g. FSL) and reading/writing popular file formats (e.g. NIfTI) in GPI.

Installation

Follow the instructions in this article for installing new node libraries in GPI.

Dependencies

• GPI Framework version 1.0.0 or newer (must have the BORG)
• NIBabel - Python libraries for reading and writing common neuroimaging file formats
  • pip install nibabel - make sure you use the pip associated with GPI's Python
• FSL - FNIRB Software Library
  • Follow the installation instructions on the FSL website, such that flirt, bet, and fast are in your PATH