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  1. precision-oncology-ngs-pipeline precision-oncology-ngs-pipeline Public

    Modular Nextflow DSL2 workflow for NGS quality control, alignment, BAM processing, and precision oncology variant analysis.

    Nextflow

  2. pcsk9-crispr-guide-discovery-pipeline pcsk9-crispr-guide-discovery-pipeline Public

    Annotation-aware CRISPR-Cas9 guide RNA discovery pipeline for the human PCSK9 locus using NCBI genomic annotations, exon parsing, PAM-site identification, and sequence-based candidate prioritization.

    Jupyter Notebook

  3. GLP1R-Ligand-Screening-Using-ChEMBL-UniProt-AlphaFold GLP1R-Ligand-Screening-Using-ChEMBL-UniProt-AlphaFold Public

    Computational screening of a novel GLP-1 receptor candidate (SMILES: O=C(O)c1ccc2nc(CN3CCC(c4ccc(F)c(OCC)n4)CC3)n(CC3CCO3)c2c1) using ChEMBL, UniProt, AlphaFold and RDKit. Max Tanimoto similarity t…

    Jupyter Notebook

  4. AI-Driven-ADME-Optimization-Platform AI-Driven-ADME-Optimization-Platform Public

    A Python and RDKit-based machine learning pipeline for early-stage drug discovery that screens molecules for toxicity risk, oral bioavailability, blood-brain barrier penetration, and metabolic clea…

    Python