Research Compendium of the project pulledRates
Please cite this compendium using:
Helmstetter, A.J., Glemin, S., Käfer, J., Zenil-Ferguson, R., Sauquet, H., de Boer, H., Dagallier, L.P.M., Mazet, N., Reboud, E.L., Couvreur, T.L. and Condamine, F.L., 2022. Pulled diversification rates, lineages-through-time plots, and modern macroevolutionary modeling. Systematic Biology, 71(3), pp.758-773.
This repository is structured as follow:
-
data/: contains all raw data required to perform analyses -
rscripts/: contains R scripts to run each step of the workflow -
outputs/: contains all the results created during the workflow -
figures/: contains all the figures created during the workflow -
paper/: contains all the manuscript and related content (biblio, templates, etc.) -
R/: contains R functions developed especially for this project -
man/: contains help files of R functions -
DESCRIPTION: contains project metadata (author, date, dependencies, etc.)