Transition to UV

.github/workflows/check_format.yml

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+# This workflow will install Python dependencies and check formatting with Ruff
+
+name: Format check with ruff
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.11"]
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Setup environment
+      run: |
+        make setup
+    - name: Check formatting with ruff
+      run: |
+        make check

.github/workflows/check_types.yml

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+# This workflow will install Python dependencies and check formatting with Ruff
+
+name: Type check with mypy
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+          python-version: ["3.11"]
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Setup environment
+      run: |
+        make setup
+    - name: Check types with mypy
+      run: |
+        make type

.github/workflows/release.yml

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+# This workflow will upload a Python Package to PyPI when a release is created
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  contents: read
+
+jobs:
+  build-package:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.x"
+
+      - name: Setup project environment
+        run: |
+          make setup
+
+      - name: Build project
+        run: |
+          make build
+
+      - name: Upload distributions
+        uses: actions/upload-artifact@v4
+        with:
+          name: release-dists
+          path: dist/
+
+  pypi-publish:
+    runs-on: ubuntu-latest
+    needs: build-package
+    permissions:
+      # IMPORTANT: this permission is mandatory for trusted publishing
+      id-token: write
+
+    # Dedicated environments with protections for publishing are strongly recommended.
+    # For more information, see: https://docs.github.com/en/actions/deployment/targeting-different-environments/using-environments-for-deployment#deployment-protection-rules
+    environment:
+      name: pypi
+      # OPTIONAL: uncomment and update to include your PyPI project URL in the deployment status:
+      # url: https://pypi.org/p/cochar
+      #
+      # ALTERNATIVE: if your GitHub Release name is the PyPI project version string
+      # ALTERNATIVE: exactly, uncomment the following line instead:
+      url: https://pypi.org/project/cochar/${{ github.event.release.name }}
+
+    steps:
+      - name: Retrieve release distributions
+        uses: actions/download-artifact@v4
+        with:
+          name: release-dists
+          path: dist/
+
+      - name: Publish release distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          packages-dir: dist/
+
+  update-release:
+      runs-on: ubuntu-latest
+      needs: build-package
+
+      permissions:
+        contents: write
+
+      steps:
+        - name: Checkout code
+          uses: actions/checkout@v4
+          with:
+            fetch-depth: 0
+
+        - name: Retrieve release distributions
+          uses: actions/download-artifact@v4
+          with:
+            name: release-dists
+            path: dist/
+
+        - name: Upload Release Assets
+          run: gh release upload ${{ github.event.release.tag_name }} dist/*
+          env:
+            GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+  upload-gh-page:
+    runs-on: ubuntu-latest
+    needs: build-package
+
+    permissions:
+      contents: write
+      pages: write
+      id-token: write
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.x"
+
+      - name: Setup environment
+        run: |
+          make setup
+
+      - name: Upload to GitHub Pages
+        run: |
+          uv run mkdocs gh-deploy --force
+        env:
+            GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/tests.yml

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+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Test with pytest
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.12", "3.13", "3.14"]
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Setup environment
+      run: |
+        make setup
+
+    - name: Test with pytest
+      run: |
+        uv run --python ${{ matrix.python-version }} pytest -m "not slow"