Bump v1.1.1 - #187
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exclusive #184
harden measured-phenotype preprocessing
of the README
documentation examples
across translated READMEs
filters remove the target
- Remove broken 404 URL (larc-tsukuba phenotype page) from all 11 translated READMEs, replacing hyperlinks with plain text - Remove non-existent commit hash link from doc/RELEASE.md (v0.1.3 entry) - Replace broken mousephenotype.org/data/genes hyperlink with inline code in doc/RELEASE.md - Add .lycheeignore to exclude doi.org URL that returns 403 to automated crawlers
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v1.1.1 (2026-07-31)
🖼️ User Interface
Add a node-count range filter for modules in web visualizations
Issue: #167
Render overlapping Human Disease and Phenotype highlights as concentric rings
Issue: #158
Thanks @aki2274 for reporting the issue!!
Consolidate phenotype highlight options across genotype, life-stage, and sex metadata
Issue: #183
Remove the desktop left panel scrollbar
🐛 Bug Fixes
Serialize missing
effect_sizevalues as standard JSONnullin JSONL outputs while preserving internal missing-value handlingIssue: #186
Make Female and Male filters mutually exclusive in web visualizations
Issue: #184
Fix Gene List input-limit semantics and prevent edge loss caused by pre-pruning
Issue: #182
Hide residual nodes and edges when Gene Symbol filters remove the target gene
Resolve MP names from the selected ontology IDs and keep disease annotations empty for non-significant records
Preserve significant annotations as single records and expand non-significant measurements to all most-specific non-root intermediate MP mappings
Prefer significant annotations when deduplicating condition-equivalent records so that missing effect sizes cannot replace significant annotations
📝 Documentation
doc/CLI.mdand shorten the English and Japanese README files🔧 Maintenance