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CWL test execution failed.
Returned non-zero but it should be zero
Test: tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/echo-tool.cwl
job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
out: "hello test env\n"
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#any_input_param
doc: Test Any type input parameter
tags:
- required
- command_line_tool
line: '409'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/any-type-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/any-type-compat.cwl
output:
output1:
- hello
- world
output2:
- foo
- bar
output3: hello
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#any_outputSource_compatibility
doc: Testing Any type compatibility in outputSource
tags:
- required
- workflow
line: '195'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-tool.cwl
output:
args:
- bwa
- mem
- -t
- '2'
- -I
- 1,2,3,4
- -m
- '3'
- chr20.fa
- example_human_Illumina.pe_1.fastq
- example_human_Illumina.pe_2.fastq
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_basic_generation
doc: General test of command line generation
tags:
- required
- command_line_tool
line: '4'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nested-array-job.yml
output:
echo:
checksum: sha1$3f786850e387550fdab836ed7e6dc881de23001b
location: echo.txt
class: File
size: 2
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nested-array.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_gen_arrayofarrays
doc: Test command line generation of array-of-arrays
tags:
- required
- command_line_tool
line: '1242'
CWL test execution failed.
Returned non-zero but it should be zero
Test: output:
args:
- cat
- -n
- hello.txt
job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-n-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat1-testcli.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_optional_bindings_provided
doc: Test command line with optional input (provided)
tags:
- required
- command_line_tool
line: '44'
CWL test execution failed.
Returned non-zero but it should be zero
Test: output:
args:
- cat
- hello.txt
job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat1-testcli.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_optional_inputs_missing
doc: Test command line with optional input (missing)
tags:
- required
- command_line_tool
line: '36'
CWL test execution failed.
Returned non-zero but it should be zero
Test: output: {}
job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/default_path_job.yml
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/default_path.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#default_path_notfound_warning
doc: Test warning instead of error when default path is not found
tags:
- required
- command_line_tool
line: '1411'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
outlist:
size: 20
location: output.txt
checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
class: File
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir2.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_input_docker
doc: Test directory input in Docker
tags:
- required
- command_line_tool
line: '1114'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
outlist:
size: 20
location: output.txt
checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
class: File
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_input_param_ref
doc: Test directory input with parameter reference
tags:
- required
- command_line_tool
line: '1101'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4-job.yml
output:
outlist:
checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
size: 20
location: output.txt
class: File
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_secondaryfiles
doc: Test directories in secondaryFiles
tags:
- required
- command_line_tool
line: '1151'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
foo:
location: foo
class: File
checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
size: 4
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out2.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#docker_json_output_location
doc: Test support for reading cwl.output.json when running in a Docker container
and just 'location' is provided.
tags:
- shell_command
- command_line_tool
line: '955'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
foo:
location: foo
class: File
checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
size: 4
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#docker_json_output_path
doc: Test support for reading cwl.output.json when running in a Docker container
and just 'path' is provided.
tags:
- required
- command_line_tool
line: '939'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
thing:
checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
location: thing
class: File
size: 0
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/docker-output-dir.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dockeroutputdir
doc: Test dockerOutputDirectory
tags:
- docker
- command_line_tool
line: '1386'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
outlist:
checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
size: 20
location: output.txt
class: File
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir5.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_initial_workdir
doc: Test dynamic initial work dir
tags:
- initial_work_dir
- command_line_tool
line: '1165'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines10-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#embedded_subworkflow
doc: Test embedded subworkflow
tags:
- subworkflow
- workflow
line: '1299'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir
doc: Test $HOME and $TMPDIR are set correctly
tags:
- required
- command_line_tool
line: '1254'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar2.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir_docker
doc: Test $HOME and $TMPDIR are set correctly in Docker
tags:
- required
- command_line_tool
line: '1261'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
out:
class: File
checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
location: out
size: 15
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-tool1.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#envvar_req
doc: Test EnvVarRequirement
tags:
- env_var
- command_line_tool
line: '325'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
output: 1
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any
doc: Test default usage of Any in expressions.
tags:
- inline_javascript
- expression_tool
line: '149'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
output: 1
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_null
doc: Test explicitly passing null to Any type inputs with default values.
tags:
- inline_javascript
- expression_tool
line: '157'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-tool.cwl
output:
output: 2
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_nullstring_nodefaultany
doc: Testing the string 'null' does not trip up an Any without a default value.
tags:
- inline_javascript
- expression_tool
line: '187'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
output: 2
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_string
doc: Testing the string 'null' does not trip up an Any with a default value.
tags:
- inline_javascript
- expression_tool
line: '165'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc2-tool.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_outputEval
doc: Test outputEval to transform output
tags:
- inline_javascript
- command_line_tool
line: '224'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/parseInt-job.json
output:
output: 42
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/parseInt-tool.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_parseint
doc: Test ExpressionTool with Javascript engine
tags:
- inline_javascript
- expression_tool
line: '217'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
out:
checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
location: whatever.txt
class: File
size: 2
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/js-expr-req-wf.cwl#wf
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expressionlib_tool_wf_override
doc: Test that expressionLib requirement of individual tool step overrides
expressionLib of workflow.
tags:
- inline_javascript
- workflow
line: '1268'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
lit:
location: a_file
class: File
checksum: sha1$fea23663b9c8ed71968f86415b5ec091bb111448
size: 19
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal-ex.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#exprtool_file_literal
doc: Test file literal output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1353'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
lit:
location: a_file
class: File
checksum: sha1$a49c4cc1531107fe689606f89c9391db4f8efe15
size: 21
secondaryFiles:
- class: File
location: b_file
checksum: sha1$5ff34169047fdff65569f0624c6395799e213826
size: 21
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal-ex1.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#exprtool_literal_secondary_file
doc: Test file literal with a secondary file output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1365'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/docker-array-secondaryfiles-job.json
output:
bai_list:
checksum: sha1$081fc0e57d6efa5f75eeb237aab1d04031132be6
location: fai.list
class: File
size: 386
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/docker-array-secondaryfiles.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#filesarray_secondaryfiles
doc: Test required, optional and null secondaryFiles on array of files.
tags:
- docker
- inline_javascript
- command_line_tool
line: '1306'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest-job.json
output:
output:
location: output.txt
format: http://edamontology.org/format_2330
size: 1111
class: File
checksum: sha1$97fe1b50b4582cebc7d853796ebd62e3e163aa3f
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#format_checking
doc: Test simple format checking.
tags:
- required
- command_line_tool
line: '818'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
out:
class: File
checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
location: out
size: 15
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/imported-hint.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#hints_import
doc: Test hints with $import
tags:
- required
- command_line_tool
line: '1399'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
output_file:
class: File
checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
location: output.txt
size: 13
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat5-tool.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#hints_unknown_ignored
doc: Test unknown hints are ignored.
tags:
- required
- command_line_tool
line: '500'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/arguments-job.yml
output:
classfile:
checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
location: Hello.class
class: File
size: 0
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/linkfile.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_expr
doc: Test expression in InitialWorkDir listing
tags:
- initial_work_dir
- command_line_tool
line: '1205'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/string-job.json
output:
out:
class: File
checksum: sha1$6a47aa22b2a9d13a66a24b3ee5eaed95ce4753cf
location: example.conf
size: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/iwdr-entry.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_trailingnl
doc: Test if trailing newline is present in file entry in InitialWorkDir
tags:
- initial_work_dir
- command_line_tool
line: '607'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc4-tool.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#inline_expressions
doc: Test inline expressions
tags:
- inline_javascript
- command_line_tool
line: '619'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
outlist:
size: 20
location: output.txt
checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
class: File
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir6.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_dir_inputbinding
doc: Test directory input with inputBinding
tags:
- shell_command
- command_line_tool
line: '1229'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal.yml
output:
output_file:
class: File
checksum: sha1$d0e04ff6c413c7d57f9a0ca0a33cd3ab52e2dd9c
location: output.txt
size: 18
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_file_literal
doc: Test file literal as input
tags:
- required
- command_line_tool
line: '1193'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4-subdir-2-job.yml
output:
outlist:
checksum: sha1$9d9bc8f5252d39274b5dfbac64216c6e888f5dfc
size: 14
location: output.txt
class: File
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#job_input_subdir_primary_and_secondary_subdirs
doc: Test specifying secondaryFiles in same subdirectory of the job input as the
primary input file.
tags:
- required
- command_line_tool
line: '1881'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
foo:
location: foo
class: File
checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
size: 4
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out4.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#json_output_location_relative
doc: Test support for reading cwl.output.json where 'location' is relative
reference to output dir.
tags:
- required
- command_line_tool
line: '986'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
foo:
location: foo
class: File
checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
size: 4
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/test-cwl-out3.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#json_output_path_relative
doc: Test support for reading cwl.output.json where 'path' is relative path in
output dir.
tags:
- required
- command_line_tool
line: '971'
CWL test execution failed.
Returned non-zero but it should be zero
Test: output: {}
job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/metadata.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#metadata
doc: Test metadata
tags:
- required
- command_line_tool
line: '811'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/abc.json
output:
files:
- location: a
size: 0
class: File
checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
- location: b
size: 0
class: File
checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
- location: c
size: 0
class: File
checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/glob-expr-list.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#multiple_glob_expr_list
doc: Test support for returning multiple glob patterns from expression
tags:
- required
- command_line_tool
line: '1001'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/basename-fields-job.yml
output:
extFile:
checksum: sha1$301a72c82a835e1737caf30f94d0eec210c4d9f1
class: File
size: 5
location: Any
path: Any
rootFile:
checksum: sha1$b4a583c391e234cf210e1d576f68f674c8ad7ecd
class: File
size: 10
location: Any
path: Any
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/basename-fields-test.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nameroot_nameext_generated
doc: Test that nameroot and nameext are generated from basename at execution
time by the runner
tags:
- step_input
- workflow
line: '1509'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
b:
checksum: sha1$c4cfd130e7578714e3eef91c1d6d90e0e0b9db3e
location: whale.xtx
class: File
size: 21
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nameroot.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nameroot_nameext_stdout_expr
doc: Test nameroot/nameext expression in arguments, stdout
tags:
- required
- command_line_tool
line: '1217'
CWL test execution failed.
Returned non-zero but it should be zero
Test: output:
args:
- bwa
- mem
- chr20.fa
- -XXX
- -YYY
- example_human_Illumina.pe_1.fastq
- -YYY
- example_human_Illumina.pe_2.fastq
job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/binding-test.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nested_prefixes_arrays
doc: Test nested prefixes with arrays
tags:
- required
- command_line_tool
line: '15'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines8-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nested_workflow
doc: Test nested workflow
tags:
- subworkflow
- workflow
- inline_javascript
line: '417'
CWL test execution failed.
Returned non-zero but it should be zero
Test: output:
out: "t\n"
job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-defined.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#null_missing_params
doc: Test that missing parameters are null (not undefined) in expression
tags:
- inline_javascript
- command_line_tool
line: '1481'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
t1:
bar:
b az: 2
b"az:
b'az: 1
baz: zab1
buz:
- a
- b
- c
t10: 1
t11: 1
t12:
t13: -zab1
t14: -zab1
t15: -zab1
t16: -zab1
t17: zab1 zab1
t18: zab1 zab1
t19: zab1 zab1
t2:
b az: 2
b"az:
b'az: 1
baz: zab1
buz:
- a
- b
- c
t20: zab1 zab1
t21: 2 2
t22: true true
t23: true true
t24: null null
t25: b
t26: b b
t3:
b az: 2
b"az:
b'az: 1
baz: zab1
buz:
- a
- b
- c
t4:
b az: 2
b"az:
b'az: 1
baz: zab1
buz:
- a
- b
- c
t5: zab1
t6: zab1
t7: zab1
t8: zab1
t9: 2
t27:
t28: 3
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/params2.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_evaluation_expr
doc: Test parameter evaluation, with support for JS expressions
tags:
- inline_javascript
- command_line_tool
line: '732'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
t1:
bar:
b az: 2
b"az:
b'az: 1
baz: zab1
buz:
- a
- b
- c
t10: 1
t11: 1
t12:
t13: -zab1
t14: -zab1
t15: -zab1
t16: -zab1
t17: zab1 zab1
t18: zab1 zab1
t19: zab1 zab1
t2:
b az: 2
b"az:
b'az: 1
baz: zab1
buz:
- a
- b
- c
t20: zab1 zab1
t21: 2 2
t22: true true
t23: true true
t24: null null
t25: b
t26: b b
t3:
b az: 2
b"az:
b'az: 1
baz: zab1
buz:
- a
- b
- c
t4:
b az: 2
b"az:
b'az: 1
baz: zab1
buz:
- a
- b
- c
t5: zab1
t6: zab1
t7: zab1
t8: zab1
t9: 2
t27:
t28: 3
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/params.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_evaluation_noexpr
doc: Test parameter evaluation, no support for JS expressions
tags:
- required
- command_line_tool
line: '654'
CWL test execution failed.
Returned non-zero but it should be zero
Test: output:
out: "f\n"
job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-defined.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_notnull_expr
doc: Test that provided parameter is not null in expression
tags:
- inline_javascript
- command_line_tool
line: '1489'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/rename-job.json
output:
outfile:
class: File
checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
location: fish.txt
size: 1111
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/rename.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#rename
doc: Test InitialWorkDirRequirement with expression in filename.
tags:
- initial_work_dir
- command_line_tool
line: '594'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
out:
class: File
checksum: sha1$cdc1e84968261d6a7575b5305945471f8be199b6
location: out
size: 9
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-wf2.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#requirement_override_hints
doc: Test requirements override hints
tags:
- env_var
- workflow
line: '436'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
out:
class: File
checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
location: out
size: 15
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-wf1.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#requirement_priority
doc: Test requirement priority
tags:
- env_var
- workflow
line: '424'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-job.json
output:
out:
class: File
checksum: sha1$cdc1e84968261d6a7575b5305945471f8be199b6
location: out
size: 9
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/env-wf3.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#requirement_workflow_steps
doc: Test requirements on workflow steps
tags:
- env_var
- workflow
line: '448'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines3-job.json
output:
count_output:
- 16
- 1
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines18-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#scatter_embedded_subworkflow
doc: Test simple scatter over an embedded subworkflow
tags:
- workflow
- inline_javascript
line: '1895'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
count_output:
- 16
- 1
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines14-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#scatter_multi_input_embedded_subworkflow
doc: Test simple multiple input scatter over an embedded subworkflow
tags:
- workflow
- scatter
- subworkflow
- multiple_input
- inline_javascript
line: '1903'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-job.json
output:
output:
location: output.txt
size: 12
class: File
checksum: sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-tool.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#schemadef_req_tool_param
doc: Test SchemaDefRequirement definition used in tool parameter
tags:
- schema_def
- command_line_tool
line: '628'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-job.json
output:
output:
location: output.txt
size: 12
class: File
checksum: sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/schemadef-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#schemadef_req_wf_param
doc: Test SchemaDefRequirement definition used in workflow parameter
tags:
- schema_def
- workflow
line: '641'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect
doc: Test command line with stderr redirection
output:
output_file:
class: File
checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
size: 4
location: error.txt
tags:
- required
- command_line_tool
line: '101'
CWL test execution failed.
Returned non-zero but it should be zero
Test: output:
output_file:
class: File
size: 4
checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
location: std.err
job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr-mediumcut.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect_mediumcut
doc: Test command line with stderr redirection, named brief syntax
tags:
- required
- command_line_tool
line: '125'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr-shortcut.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect_shortcut
doc: Test command line with stderr redirection, brief syntax
output:
output_file:
class: File
checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
size: 4
location: Any
tags:
- required
- command_line_tool
line: '113'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
output:
checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
class: File
location: output
size: 13
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-tool.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdinout_redirect
doc: Test command execution in with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '205'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
output_txt:
class: File
checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
location: output.txt
size: 13
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat4-tool.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdinout_redirect_docker
doc: Test command execution in Docker with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '137'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
output_file:
class: File
checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
location: output.txt
size: 13
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_docker
doc: Test command execution in Docker with stdout redirection
tags:
- docker
- command_line_tool
line: '65'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
output_file:
class: File
checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
location: cat-out
size: 13
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool-mediumcut.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_mediumcut_docker
doc: Test command execution in Docker with mediumcut stdout redirection
tags:
- docker
- command_line_tool
line: '89'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool-shortcut.cwl
output:
output_file:
class: File
checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
location: Any
size: 13
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_shortcut_docker
doc: Test command execution in Docker with shortcut stdout redirection
tags:
- docker
- command_line_tool
line: '77'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines9-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value
doc: Test default value on step input parameter
tags:
- inline_javascript
- workflow
line: '460'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_nosource
doc: Test use default value on step input parameter with empty source
tags:
- inline_javascript
- workflow
line: '467'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file1-null.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_nullsource
doc: Test use default value on step input parameter with null source
tags:
- inline_javascript
- workflow
line: '474'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
count_output: 1
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_overriden
doc: Test default value on step input parameter overridden by provided source
tags:
- inline_javascript
- workflow
line: '481'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort-job.json
output:
output:
class: File
checksum: sha1$b9214658cc453331b62c2282b772a5c063dbd284
location: output.txt
size: 1111
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort-packed.cwl#main
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_compound_doc
doc: Test compound workflow document
tags:
- required
- workflow
line: '1497'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
default_output: workflow_default
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/echo-wf-default.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_default_tool_default
doc: Test that workflow defaults override tool defaults
tags:
- required
- workflow
line: '318'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
count_output: 1
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines5-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_input_default_missing
doc: Test workflow with default value for input parameter (missing)
tags:
- inline_javascript
- workflow
line: '304'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines5-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_input_default_provided
doc: Test workflow with default value for input parameter (provided)
tags:
- inline_javascript
- workflow
line: '311'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job4.json
output:
out: []
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf4.cwl#main
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_dotproduct_twoempty
doc: Test workflow scatter with two empty scatter parameters and dotproduct join
method
tags:
- scatter
- workflow
line: '401'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job1.json
output:
out: []
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf1.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_emptylist
doc: Test workflow scatter with single empty list parameter
tags:
- scatter
- workflow
line: '369'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job2.json
output:
out: []
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf3.cwl#main
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_flat_crossproduct_oneempty
doc: Test workflow scatter with two scatter parameters, one of which is empty
and flat_crossproduct join method
tags:
- scatter
- workflow
line: '393'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job3.json
output:
out: []
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf3.cwl#main
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_nested_crossproduct_firstempty
doc: Test workflow scatter with two scatter parameters and nested_crossproduct
join method with first list empty
tags:
- scatter
- workflow
line: '385'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-empty-job2.json
output:
out:
- []
- []
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf2.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_nested_crossproduct_secondempty
doc: Test workflow scatter with two scatter parameters and nested_crossproduct
join method with second list empty
tags:
- scatter
- workflow
line: '377'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job3.json
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf6.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valueFrom
doc: Test valueFrom eval on scattered input parameter
output:
out_message:
- checksum: sha1$98030575f6fc40e5021be5a8803a6bef94aee11f
location: Any
class: File
size: 16
- checksum: sha1$edcacd50778d98ae113015406b3195c165059dd8
location: Any
class: File
size: 16
tags:
- scatter
- step_input
- workflow
line: '1066'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job1.json
output:
out:
- foo one one
- foo one two
- foo one three
- foo one four
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf1.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valuefrom
doc: Test workflow scatter with single scatter parameter and two valueFrom on
step input (first and current el)
tags:
- scatter
- step_input
- workflow
line: '1026'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job1.json
output:
out:
- foo one one
- foo two two
- foo three three
- foo four four
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf5.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valuefrom_twice_current_el
doc: Test workflow scatter with single scatter parameter and two valueFrom on
step input (current el twice)
tags:
- scatter
- step_input
- workflow
line: '1058'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job1.json
output:
out:
- foo one
- foo two
- foo three
- foo four
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf1.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_single_param
doc: Test workflow scatter with single scatter parameter
tags:
- scatter
- workflow
line: '337'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job2.json
output:
out:
- foo one three
- foo two four
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf4.cwl#main
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_two_dotproduct
doc: Test workflow scatter with two scatter parameters and dotproduct join
method
tags:
- scatter
- workflow
line: '361'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job2.json
output:
out:
- foo one three
- foo one four
- foo two three
- foo two four
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf3.cwl#main
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_two_flat_crossproduct
doc: Test workflow scatter with two scatter parameters and flat_crossproduct
join method
tags:
- scatter
- workflow
line: '353'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job2.json
output:
out:
- - foo one three
- foo one four
- - foo two three
- foo two four
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-wf2.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_two_nested_crossproduct
doc: Test workflow scatter with two scatter parameters and nested_crossproduct
join method
tags:
- scatter
- workflow
line: '345'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job2.json
output:
out:
- foo one one three
- foo one two four
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf4.cwl#main
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twoparam_dotproduct_valuefrom
doc: Test workflow scatter with two scatter parameters and dotproduct join
method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1050'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job2.json
output:
out:
- foo one one three
- foo one one four
- foo one two three
- foo one two four
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf3.cwl#main
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twoparam_flat_crossproduct_valuefrom
doc: Test workflow scatter with two scatter parameters and flat_crossproduct
join method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1042'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job2.json
output:
out:
- - foo one one three
- foo one one four
- - foo one two three
- foo one two four
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf2.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twoparam_nested_crossproduct_valuefrom
doc: Test workflow scatter with two scatter parameters and nested_crossproduct
join method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1034'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort-job.json
output:
output:
class: File
checksum: sha1$b9214658cc453331b62c2282b772a5c063dbd284
location: output.txt
size: 1111
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_simple
doc: Test simple workflow
tags:
- required
- workflow
line: '488'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/conflict-job.json
output:
fileout:
location: out.txt
checksum: sha1$a2d8d6e7b28295dc9977dc3bdb652ddd480995f0
class: File
size: 25
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/conflict-wf.cwl#collision
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_two_inputfiles_namecollision
doc: Test workflow two input files with same name.
tags:
- required
- workflow
line: '1087'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines2-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_expressiontool
doc: Test two step workflow with inline tools
tags:
- inline_javascript
- workflow
line: '238'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines13-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_nomultiple
doc: Test when step source is a single-item list and there is no linkMerge, then
it not wrapped in a list, and that MultipleInputFeatureRequirement is not
required.
tags:
- inline_javascript
- workflow
line: '283'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines19-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_nomultiple_merge_nested
doc: Test when step source is a single-item list and linkMerge is listed, then
it is wrapped in a list.
tags:
- inline_javascript
- workflow
line: '294'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines1-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_parseInt
doc: Test two step workflow with imported tools
tags:
- inline_javascript
- workflow
line: '231'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines3-job.json
output:
count_output:
- 16
- 1
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines3-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter
doc: Test single step workflow with Scatter step
tags:
- scatter
- inline_javascript
- workflow
line: '245'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-job.json
output:
count_output: 34
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines7-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter_multiple_flattened
doc: Test single step workflow with Scatter step and two data links connected to
same input, flattened merge behavior
tags:
- multiple_input
- inline_javascript
- workflow
line: '273'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
count_output:
- 16
- 1
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter_multiple_merge
doc: Test single step workflow with Scatter step and two data links connected to
same input, default merge behavior
tags:
- scatter
- multiple_input
- inline_javascript
- workflow
line: '253'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-job.json
output:
count_output:
- 32
- 2
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_scatter_multiple_nested
doc: Test single step workflow with Scatter step and two data links connected to
same input, nested merge behavior
tags:
- scatter
- multiple_input
- inline_javascript
- workflow
line: '263'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines15-wf.cwl
doc: Test twice nested subworkflow
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_embedded_subsubworkflow
tags:
- workflow
- subworkflow
- inline_javascript
line: '1911'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines17-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_with_subsubworkflow_and_tool
doc: Test subworkflow of mixed depth with tool after
tags:
- workflow
- subworkflow
- inline_javascript
line: '1925'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
count_output: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines16-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_with_tool_and_subsubworkflow
doc: Test subworkflow of mixed depth with tool first
tags:
- workflow
- subworkflow
- inline_javascript
line: '1918'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int.json
output:
o: 250
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input
doc: Test integer workflow input and outputs
tags:
- workflow
- inline_javascript
- expression_tool
line: '1953'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int.json
output:
o: 250
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-optional-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_optional_specified
doc: Test optional integer workflow inputs (specified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1960'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
o: 16
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-optional-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_optional_unspecified
doc: Test optional integer workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1967'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/record-output-job.json
output:
orec:
ofoo:
location: foo
size: 1111
class: File
checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
obar:
location: bar
size: 12010
class: File
checksum: sha1$aeb3d11bdf536511649129f4077d5cda6a324118
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/record-output-wf.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_records_inputs_and_outputs
doc: Test record type inputs to and outputs from workflows.
tags:
- workflow
- shell_command
line: '1932'
CWL test execution failed.
Returned non-zero but it should be zero
Test: job:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stagefile-job.yml
output:
outfile:
checksum: sha1$b769c7b2e316edd4b5eb2d24799b2c1f9d8c86e6
size: 1111
location: bob.txt
class: File
tool:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stagefile.cwl
id:
file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#writable_stagedfiles
doc: Test writable staged files.
tags:
- initial_work_dir
- command_line_tool
line: '1179'
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dependenciesPull requests that update a dependency filepython:uvPull requests that update python:uv code
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Bumps ruff from 0.15.13 to 0.15.14.
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Commits
9ad2da3Bump 0.15.14 (#25295)c714e84[ty] Modernize setup of union types in mdtests (#25291)8a8e35e[flake8-comprehensions] SkipC417for lambdas with positional-only parame...aea5ed4Avoid unnecessary parser lookahead for operators (#25290)e9d72bb[ty] Allow enum member accesses onself(#25077)6cbd59bSetexclude-newer = "7 days"in our PEP-723 scripts (#25285)9999a39Update code example on how to update Neovim LSP log level (#25284)67d8c54[ty] Retain recursively-defined state in binary expressions (#25277)25a3191[ty] Refine Callable class-decorator fallback for unknown results (#25250)c423054Add a recursion limit to the parser (#24810)Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
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