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scripts and graphs for plastpath metagenome analysis

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Name		Name	Last commit message	Last commit date
amr_contigs_taxonomy		amr_contigs_taxonomy
.gitignore.txt		.gitignore.txt
LATR.sh		LATR.sh
README.md		README.md
bact_count.sh		bact_count.sh
bbmap_host.sh		bbmap_host.sh
blast_bins.sh		blast_bins.sh
blast_contigs_card.sh		blast_contigs_card.sh
bowtie_host_removal.sh		bowtie_host_removal.sh
checkm_script.sh		checkm_script.sh
depth_bam.sh		depth_bam.sh
extracting_contigs.sh		extracting_contigs.sh
fastp_qc.sh		fastp_qc.sh
fastp_script.sh		fastp_script.sh
fastqc_script.sh		fastqc_script.sh
gen_bam.sh		gen_bam.sh
geneius.sh		geneius.sh
gtdb.sh		gtdb.sh
kma_index_db.sh		kma_index_db.sh
kma_resistance.sh		kma_resistance.sh
kraken2_contigs.sh		kraken2_contigs.sh
kraken2_taxonomy.sh		kraken2_taxonomy.sh
kraken_build.sh		kraken_build.sh
latr-wrapper.py		latr-wrapper.py
latr_config.sh		latr_config.sh
latr_pipeline.sh		latr_pipeline.sh
megahit_script.sh		megahit_script.sh
metabat2_script.sh		metabat2_script.sh
metaquast_group.sh		metaquast_group.sh
prokka.sh		prokka.sh
quast_script.sh		quast_script.sh
random.sh		random.sh
resview.html		resview.html
test_read.sh		test_read.sh

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plastpath

scripts and graphs for plastpath metagenome analysis

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scripts and graphs for plastpath metagenome analysis

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