CITATION.cff

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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SampleCore" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'SampleCore: Sampling Strategies for Constructing Core Collections'
version: 0.1.0.9000
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SampleCore
- type: url
  value: https://doi.org/10.5281/zenodo.20449499
- type: url
  value: https://aravind-j.github.io/SampleCore/
abstract: Implements multiple allocation and selection strategies of sampling to construct
  core collections primarily from clustered or grouped germplasm collection data.
  Provides methods for allocating entries to clusters/groups based on group sizes,
  group-wise distance-based diversity metrics, and group-wise diversity index estimates.
  Includes procedures for selecting entries within clusters/groups through random
  sampling, genetic distance-based approaches, and optimized diversity metric–based
  selection methods. See the package documentation for more, including full list of
  references for the methods implemented.
authors:
- family-names: Aravind
  given-names: J.
  email: j.aravind@icar.org.in
  orcid: https://orcid.org/0000-0002-4791-442X
- family-names: Roy
  given-names: Suman
  email: suman.roy@icar.org.in
  orcid: https://orcid.org/0000-0001-5612-8415
- family-names: Singh
  given-names: Anju Mahendru
  email: anju.singh@icar.org.in
  orcid: https://orcid.org/0000-0001-6958-1630
preferred-citation:
  type: manual
  title: 'SampleCore: Sampling Strategies for Constructing Core Collections'
  authors:
  - family-names: Aravind
    given-names: J.
    email: j.aravind@icar.org.in
    orcid: https://orcid.org/0000-0002-4791-442X
  - family-names: Roy
    given-names: Suman
    email: suman.roy@icar.org.in
    orcid: https://orcid.org/0000-0001-5612-8415
  - family-names: Singh
    given-names: Anju Mahendru
    email: anju.singh@icar.org.in
    orcid: https://orcid.org/0000-0001-6958-1630
  notes: R package version 0.1.0.9000 https://aravind-j.github.io/SampleCore/ https://CRAN.R-project.org/package=SampleCore
repository: https://CRAN.R-project.org/package=SampleCore
repository-code: https://github.com/aravind-j/SampleCore
url: https://cran.r-project.org/package=SampleCore
contact:
- family-names: Aravind
  given-names: J.
  email: j.aravind@icar.org.in
  orcid: https://orcid.org/0000-0002-4791-442X
keywords:
- core-collections
- genebank
- germplasm
- pgr
- plant-genetic-resources
- r
references:
- type: software
  title: cluster
  abstract: 'cluster: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw
    et al.'
  notes: Imports
  url: https://svn.r-project.org/R-packages/trunk/cluster/
  repository: https://CRAN.R-project.org/package=cluster
  authors:
  - family-names: Maechler
    given-names: Martin
    email: maechler@stat.math.ethz.ch
    orcid: https://orcid.org/0000-0002-8685-9910
  - family-names: Rousseeuw
    given-names: Peter
    email: peter.rousseeuw@kuleuven.be
    orcid: https://orcid.org/0000-0002-3807-5353
  - family-names: Struyf
    given-names: Anja
  - family-names: Hubert
    given-names: Mia
    email: Mia.Hubert@uia.ua.ac.be
    orcid: https://orcid.org/0000-0001-6398-4850
  year: '2026'
  doi: 10.32614/CRAN.package.cluster
- type: software
  title: DiversityStats
  abstract: 'DiversityStats: Diversity Indices with Statistical Inference'
  notes: Imports
  url: https://aravind-j.github.io/DiversityStats/
  repository: https://CRAN.R-project.org/package=DiversityStats
  authors:
  - family-names: Aravind
    given-names: J.
    email: j.aravind@icar.org.in
    orcid: https://orcid.org/0000-0002-4791-442X
  - family-names: Roy
    given-names: Suman
    email: suman.roy@icar.org.in
    orcid: https://orcid.org/0000-0001-5612-8415
  - family-names: Singh
    given-names: Anju Mahendru
    email: anju.singh@icar.org.in
    orcid: https://orcid.org/0000-0001-6958-1630
  year: '2026'
  doi: 10.32614/CRAN.package.DiversityStats
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Imports
  url: https://ggplot2.tidyverse.org
  repository: https://CRAN.R-project.org/package=ggplot2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Chang
    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@posit.co
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  - family-names: Brand
    given-names: Teun
    name-particle: van den
    orcid: https://orcid.org/0000-0002-9335-7468
  year: '2026'
  doi: 10.32614/CRAN.package.ggplot2
- type: software
  title: igraph
  abstract: 'igraph: Network Analysis and Visualization'
  notes: Imports
  url: https://r.igraph.org/
  repository: https://CRAN.R-project.org/package=igraph
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
    orcid: https://orcid.org/0000-0001-7098-9676
  - family-names: Nepusz
    given-names: Tamás
    email: ntamas@gmail.com
    orcid: https://orcid.org/0000-0002-1451-338X
  - family-names: Traag
    given-names: Vincent
    orcid: https://orcid.org/0000-0003-3170-3879
  - family-names: Horvát
    given-names: Szabolcs
    email: szhorvat@gmail.com
    orcid: https://orcid.org/0000-0002-3100-523X
  - family-names: Zanini
    given-names: Fabio
    email: fabio.zanini@unsw.edu.au
    orcid: https://orcid.org/0000-0001-7097-8539
  - family-names: Noom
    given-names: Daniel
  - family-names: Müller
    given-names: Kirill
    email: kirill@cynkra.com
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Schoch
    given-names: David
    email: david.schoch@cynkra.com
    orcid: https://orcid.org/0000-0003-2952-4812
  - family-names: Salmon
    given-names: Maëlle
    email: maelle@cynkra.com
    orcid: https://orcid.org/0000-0002-2815-0399
  year: '2026'
  doi: 10.32614/CRAN.package.igraph
- type: software
  title: MASS
  abstract: 'MASS: Support Functions and Datasets for Venables and Ripley''s MASS'
  notes: Imports
  url: http://www.stats.ox.ac.uk/pub/MASS4/
  repository: https://CRAN.R-project.org/package=MASS
  authors:
  - family-names: Ripley
    given-names: Brian
    email: Brian.Ripley@R-project.org
  - family-names: Venables
    given-names: Bill
  year: '2026'
  doi: 10.32614/CRAN.package.MASS
- type: software
  title: mathjaxr
  abstract: 'mathjaxr: Using ''Mathjax'' in Rd Files'
  notes: Imports
  url: https://github.com/wviechtb/mathjaxr
  repository: https://CRAN.R-project.org/package=mathjaxr
  authors:
  - family-names: Viechtbauer
    given-names: Wolfgang
    email: wvb@wvbauer.com
    orcid: https://orcid.org/0000-0003-3463-4063
  year: '2026'
  doi: 10.32614/CRAN.package.mathjaxr
- type: software
  title: prospectr
  abstract: 'prospectr: Miscellaneous Functions for Processing and Sample Selection
    of Spectroscopic Data'
  notes: Imports
  url: https://github.com/l-ramirez-lopez/prospectr
  repository: https://CRAN.R-project.org/package=prospectr
  authors:
  - family-names: Stevens
    given-names: Antoine
    orcid: https://orcid.org/0000-0002-1588-7519
  - family-names: Ramirez-Lopez
    given-names: Leonardo
    email: ramirez.lopez.leo@gmail.com
    orcid: https://orcid.org/0000-0002-5369-5120
  year: '2026'
  doi: 10.32614/CRAN.package.prospectr
- type: software
  title: Rdpack
  abstract: 'Rdpack: Update and Manipulate Rd Documentation Objects'
  notes: Imports
  url: https://geobosh.github.io/Rdpack/
  repository: https://CRAN.R-project.org/package=Rdpack
  authors:
  - family-names: Boshnakov
    given-names: Georgi N.
    email: georgi.boshnakov@manchester.ac.uk
    orcid: https://orcid.org/0000-0003-2839-346X
  year: '2026'
  doi: 10.32614/CRAN.package.Rdpack
- type: software
  title: Rtsne
  abstract: 'Rtsne: T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
    Implementation'
  notes: Imports
  url: https://github.com/jkrijthe/Rtsne
  repository: https://CRAN.R-project.org/package=Rtsne
  authors:
  - family-names: Krijthe
    given-names: Jesse
    email: jkrijthe@gmail.com
  year: '2026'
  doi: 10.32614/CRAN.package.Rtsne
- type: software
  title: stats
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
    website: https://ror.org/02zz1nj61
  institution:
    name: R Foundation for Statistical Computing
    website: https://ror.org/05qewa988
    address: Vienna, Austria
  year: '2026'
  doi: 10.32614/R.manuals
- type: software
  title: vegan
  abstract: 'vegan: Community Ecology Package'
  notes: Imports
  url: https://vegandevs.github.io/vegan/
  repository: https://CRAN.R-project.org/package=vegan
  authors:
  - family-names: Oksanen
    given-names: Jari
    email: jhoksane@gmail.com
    orcid: https://orcid.org/0000-0001-7102-9626
  - family-names: Simpson
    given-names: Gavin L.
    email: ucfagls@gmail.com
    orcid: https://orcid.org/0000-0002-9084-8413
  - family-names: Blanchet
    given-names: F. Guillaume
  - family-names: Kindt
    given-names: Roeland
  - family-names: Legendre
    given-names: Pierre
  - family-names: Minchin
    given-names: Peter R.
  - family-names: O'Hara
    given-names: R.B.
  - family-names: Solymos
    given-names: Peter
  - family-names: Stevens
    given-names: M. Henry H.
  - family-names: Szoecs
    given-names: Eduard
  - family-names: Wagner
    given-names: Helene
  - family-names: Bedward
    given-names: Michael
  - family-names: Bolker
    given-names: Ben
  - family-names: Borcard
    given-names: Daniel
  - family-names: Carvalho
    given-names: Gustavo
  - family-names: De Caceres
    given-names: Miquel
  - family-names: Durand
    given-names: Sebastien
  - family-names: Evangelista
    given-names: Heloisa Beatriz Antoniazi
  - family-names: Hannigan
    given-names: Geoffrey
  - family-names: Hill
    given-names: Mark O.
  - family-names: Lahti
    given-names: Leo
  - family-names: Martino
    given-names: Cameron
  - family-names: Ouellette
    given-names: Marie-Helene
  - family-names: Ribeiro Cunha
    given-names: Eduardo
  - family-names: Smith
    given-names: Tyler
  - family-names: Stier
    given-names: Adrian
  - family-names: Ter Braak
    given-names: Cajo J.F.
  - family-names: Weedon
    given-names: James
  year: '2026'
  doi: 10.32614/CRAN.package.vegan
- type: software
  title: biotools
  abstract: 'biotools: Tools for Biometry and Applied Statistics in Agricultural Science'
  notes: Suggests
  url: https://arsilva87.github.io/biotools/
  repository: https://CRAN.R-project.org/package=biotools
  authors:
  - family-names: Silva
    given-names: Anderson Rodrigo
    name-particle: da
    email: anderson.agro@hotmail.com
    orcid: https://orcid.org/0000-0003-2518-542X
  year: '2026'
  doi: 10.32614/CRAN.package.biotools
- type: software
  title: dbscan
  abstract: 'dbscan: Density-Based Spatial Clustering of Applications with Noise (DBSCAN)
    and Related Algorithms'
  notes: Suggests
  url: https://github.com/mhahsler/dbscan
  repository: https://CRAN.R-project.org/package=dbscan
  authors:
  - family-names: Hahsler
    given-names: Michael
    email: mhahsler@lyle.smu.edu
    orcid: https://orcid.org/0000-0003-2716-1405
  - family-names: Piekenbrock
    given-names: Matthew
  year: '2026'
  doi: 10.32614/CRAN.package.dbscan
- type: software
  title: EvaluateCore
  abstract: 'EvaluateCore: Quality Evaluation of Core Collections'
  notes: Suggests
  url: https://CRAN.R-project.org/package=EvaluateCore
  repository: https://CRAN.R-project.org/package=EvaluateCore
  authors:
  - family-names: Aravind
    given-names: J.
    email: j.aravind@icar.org.in
    orcid: https://orcid.org/0000-0002-4791-442X
  - family-names: Kaur
    given-names: Vikender
    email: vikender.kaur@icar.org.in
    orcid: https://orcid.org/0000-0001-9698-7329
  - family-names: Wankhede
    given-names: Dhammaprakash Pandhari
    email: d.wankhede@icar.org.in
    orcid: https://orcid.org/0000-0001-6384-8664
  - family-names: Nanjundan
    given-names: Joghee
    email: j.nanjundan@icar.org.in
    orcid: https://orcid.org/0000-0001-6254-7341
  year: '2026'
  doi: 10.32614/CRAN.package.EvaluateCore
- type: software
  title: fastcluster
  abstract: 'fastcluster: Fast Hierarchical Clustering Routines for R and ''Python'''
  notes: Suggests
  url: https://danifold.net/fastcluster.html
  repository: https://CRAN.R-project.org/package=fastcluster
  authors:
  - family-names: Müllner
    given-names: Daniel
    email: daniel@danifold.net
  year: '2026'
  doi: 10.32614/CRAN.package.fastcluster
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2026'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: pander
  abstract: 'pander: An R ''Pandoc'' Writer'
  notes: Suggests
  url: https://rapporter.github.io/pander/
  repository: https://CRAN.R-project.org/package=pander
  authors:
  - family-names: Daróczi
    given-names: Gergely
    email: daroczig@rapporter.net
    orcid: https://orcid.org/0000-0003-3149-8537
  - family-names: Tsegelskyi
    given-names: Roman
    email: roman.tsegelskyi@gmail.com
  year: '2026'
  doi: 10.32614/CRAN.package.pander
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2026'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
    website: https://ror.org/02zz1nj61
  institution:
    name: R Foundation for Statistical Computing
    website: https://ror.org/05qewa988
    address: Vienna, Austria
  year: '2026'
  doi: 10.32614/R.manuals
  version: '>= 3.5'