Version : 0.1.0.9000; License: GPL-2|GPL-3
Division of Germplasm Conservation, ICAR-National Bureau of Plant Genetic Resources, New Delhi.
Implements multiple allocation and selection strategies of sampling to construct core collections primarily from clustered or grouped germplasm collection data. Provides methods for allocating entries to clusters/groups based on group sizes, group-wise distance-based diversity metrics, and group-wise diversity index estimates. Includes procedures for selecting entries within clusters/groups through random sampling, genetic distance-based approaches, and optimized diversity metric–based selection methods. See the package documentation for more, including full list of references for the methods implemented.
The package can be installed from CRAN as follows:
The development version can be installed from github as follows:
# Install development version from Github
devtools::install_github("aravind-j/SampleCore")To know whats new in this version type:
news(package='SampleCore')
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To cite the methods in the package use:
citation("SampleCore")To cite the R package 'SampleCore' in publications use:
Aravind, J., Roy, S., and Singh, A. M. (). SampleCore: Sampling Strategies for Constructing Core
Collections. R package version 0.1.0.9000, https://aravind-j.github.io/SampleCore/.
A BibTeX entry for LaTeX users is
@Manual{,
title = {SampleCore: Sampling Strategies for Constructing Core Collections},
author = {J. Aravind and Suman Roy and Anju Mahendru Singh},
note = {R package version 0.1.0.9000 https://aravind-j.github.io/SampleCore/},
}
This free and open-source software implements academic research by the authors and co-workers. If you use
it, please support the project by citing the package.