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  1. HCT_Gut_Resistome_Sequence_Processing HCT_Gut_Resistome_Sequence_Processing Public

    Bioinformatic sequence processing pipeline for HCT gut resistome metagenomic data (bash/SLURM)

    Shell

  2. MBS_Gut_Microbiome_Weight_Outcomes_Analysis MBS_Gut_Microbiome_Weight_Outcomes_Analysis Public

    This repository contains input and R code for processing microbiome data from bariatric surgery samples.

    R

  3. Smoking_Cancer_Gut_Dysbiosis_Analysis_2023 Smoking_Cancer_Gut_Dysbiosis_Analysis_2023 Public

    R

  4. Bariatric_Metagenomic_Sequence_Processing Bariatric_Metagenomic_Sequence_Processing Public

    Shell

  5. Diet_EWL_BariatricSurgery_2022 Diet_EWL_BariatricSurgery_2022 Public

    Analysis code for Sorgen et al. 2023 (Nutrients) — dietary intake and weight loss outcomes after bariatric surgery

    R