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changes to pipeline to account for HTSeq counts Python testing #30: Commit 4912ec3 pushed by weiju
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outfactored run_htseq_count() Python testing #29: Commit 7d00b36 pushed by weiju
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runThreadN also now used for STAR deduplication Python testing #28: Commit 91f85e9 pushed by weiju
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remove result directory Python testing #27: Commit 627074a pushed by weiju
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sort data folders Python testing #26: Commit 3cf5825 pushed by weiju
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added AWS S3 sync step Python testing #25: Commit 1773e16 pushed by weiju
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integrated kallisto to gs_run Python testing #24: Commit b257924 pushed by weiju
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no outTmpDir for STAR it's too complicated Python testing #23: Commit 106cf31 pushed by weiju
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3m 34s
fix: outTmpdir Python testing #22: Commit a63e8e2 pushed by weiju
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support for outTmpDir in STAR Python testing #21: Commit bb72e63 pushed by weiju
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sjdbOverhang Python testing #20: Commit efee1b4 pushed by weiju
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added args.limitSjdbInsertNsj Python testing #19: Commit 2295c67 pushed by weiju
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missing self in transcript attribute Python testing #18: Commit 4b98199 pushed by weiju
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added missing parent exon transcript parameter Python testing #17: Commit efb7a5d pushed by weiju
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rearranged r installation in workflow Python testing #16: Commit f313181 pushed by weiju
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try r lib action Python testing #15: Commit 2741017 pushed by weiju
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don't check salmon version anymore Python testing #14: Commit 6b8f334 pushed by weiju
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run star salmon pipeline from a config file Python testing #13: Commit 7b81cdb pushed by weiju
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indexing: sjdbGTFTagParentGene is now optional Python testing #12: Commit 199469b pushed by weiju
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updated requirement to not include xmlrunner Python testing #11: Commit 2fe7bac pushed by weiju
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added test workflow for Python 3.12 Python testing #10: Commit cb0319c pushed by weiju
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removed xmlrunner from project Python testing #9: Commit b94520a pushed by weiju
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